Site-specific proteolysis of mini-F plasmid replication protein RepE destroys initiator function and generates an

B C Kline1, G S Sandhu, B W Eckloff

  • 1Department of Biochemistry and Molecular Biology, Mayo Clinic/Foundation, Rochester, Minnesota 55905.

Insights

Proteolytic processing of the F plasmid RepE protein inactivates its replication initiation function. This modified protein binds DNA more strongly, acting as an incompatibility substance to control plasmid replication.

Area of Science:

  • Molecular Biology
  • Genetics
  • Microbiology

Background:

  • Plasmid F replication relies on a Rep protein with autorepressor and initiator functions.
  • The precise mechanism balancing these Rep protein functions for stable replication remains unclear.
  • Previous research suggested protein modification might play a role in this control.

Purpose of the Study:

  • To investigate the role of protein modification in controlling Plasmid F replication.
  • To detect and characterize naturally proteolyzed forms of the F RepE protein.
  • To understand how protein processing impacts RepE function and plasmid stability.

Main Methods:

  • Detection and biochemical characterization of proteolyzed F RepE protein.
  • Assays to evaluate DNA-binding affinity of the processed protein.
  • In vivo experiments to assess the effect of the altered protein on F'lac maintenance.

Main Results:

  • Naturally proteolyzed F RepE protein was identified and characterized.
  • The processed RepE molecule lacks the N-terminal 17 aminoacyl residues and initiator function.
  • The altered protein exhibits enhanced specific DNA-binding affinity, particularly with E. coli chromosomal DNA.
  • When expressed in trans, the modified RepE protein functions as an incompatibility substance, leading to the elimination of F'lac maintenance.

Conclusions:

  • Protein processing of F RepE is a mechanism for regulating plasmid replication.
  • The proteolytic cleavage inactivates initiator activity while enhancing DNA-binding.
  • This processing contributes to the control of DNA replication by modulating protein function and stability.

Related Concept Videos

Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
DNA Bacteriophages01:26

DNA Bacteriophages

Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...