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Plant membrane proteome databases.

Rainer Schwacke1, Ulf-Ingo Flügge, Reinhard Kunze

  • 1Botanical Institute, University of Cologne, Gyrhofstr. 15, D-50931 Köln, Germany.

Plant Physiology and Biochemistry : PPB
|February 15, 2005
PubMed
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This review highlights plant transmembrane protein databases, crucial for understanding cellular transport. These resources compile computational predictions and experimental data for plant proteomes.

Area of Science:

  • Plant biology
  • Molecular biology
  • Bioinformatics

Background:

  • Transmembrane (TM) proteins are vital for physiological processes, comprising 20-30% of the proteome.
  • Transporter proteins facilitate biochemical pathways across cellular membranes, including mitochondrial and chloroplast membranes.
  • Recent advancements in bioinformatics enable prediction of TM domains and subcellular localization.

Purpose of the Study:

  • To review plant transmembrane proteome databases.
  • To highlight resources compiling topology and intracellular targeting predictions.
  • To discuss websites offering experimental and bioinformatical data on plant TM proteins.

Main Methods:

  • Analysis of bioinformatical tools for TM domain and subcellular localization prediction.

Related Experiment Videos

  • Compilation of data from plant TM proteome databases.
  • Review of supplementary websites with experimental and bioinformatical data.

    • Main Results:

    • Identification and discussion of key plant TM proteome databases.
    • Integration of topology and subcellular localization predictions.
    • Inclusion of diverse experimental and bioinformatical datasets.

    Conclusions:

    • Plant TM proteome databases are valuable resources for researchers.
    • These databases aid in understanding protein function and localization in plants.
    • The reviewed websites offer comprehensive data for plant TM protein research.