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Identification of Virulence Markers of Mycobacterium abscessus for Intracellular Replication in Phagocytes
Published on: September 27, 2018
Common evolutionary origin for the unstable virulence plasmid pMUM found in geographically diverse strains of
Timothy P Stinear1, Hui Hong, Wafa Frigui
1Unité de Génétique Moléculaire Bactérienne, Institut Pasteur, Paris, France. tim.stinear@med.monash.edu.au
Abstract:
The 174-kb virulence plasmid pMUM001 in Mycobacterium ulcerans epidemic strain Agy99 harbors three very large and homologous genes that encode giant polyketide synthases (PKS) responsible for the synthesis of the lipid toxin mycolactone. Deeper investigation of M. ulcerans Agy99 resulted in identification of two types of spontaneous deletion variants of pMUM001 within a population of cells that also contained the intact plasmid. These variants arose from recombination between two 8-kb sections of the same plasmid sequence, resulting in the loss of a 65-kb region bearing two of the three mycolactone PKS genes. Investigation of nine diverse M. ulcerans strains by using PCR and Southern hybridization for eight pMUM001 gene sequences confirmed the presence of pMUM001-like elements (collectively called pMUM) in all M. ulcerans strains. Physical mapping of these plasmids revealed that like M. ulcerans Agy99, three strains had undergone major deletions in their mycolactone PKS loci. Online liquid chromatography-sequential mass spectrometry analysis of lipid extracts confirmed that strains with PKS deletions were unable to produce mycolactone or any related cometabolites. Interstrain comparisons of the plasmid gene sequences revealed greater than 98% nucleotide identity, and the phylogeny inferred from these sequences closely mimicked the phylogeny from a previous multilocus sequence typing study in which chromosomally encoded loci were used, a result that is consistent with the hypothesis that M. ulcerans diverged from the closely related organism Mycobacterium marinum by acquiring pMUM. Our results suggest that pMUM is a defining characteristic of M. ulcerans but that in the absence of purifying selection, deletion of plasmid sequences and a corresponding loss of mycolactone production readily arise.
Insights
Mycobacterium ulcerans virulence plasmid pMUM is a defining characteristic, though deletions can lead to loss of mycolactone toxin production. These deletions readily arise in the absence of purifying selection.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- The virulence plasmid pMUM001 in Mycobacterium ulcerans encodes giant polyketide synthases (PKS) essential for mycolactone toxin synthesis.
- M. ulcerans strains harbor pMUM001-like elements, collectively termed pMUM, which are crucial for the bacterium's pathogenicity.
Purpose of the Study:
- To investigate the genetic stability of the pMUM plasmid in M. ulcerans.
- To determine the impact of plasmid deletions on mycolactone production.
- To understand the evolutionary relationship between M. ulcerans and M. marinum based on pMUM acquisition.
Main Methods:
- PCR and Southern hybridization to analyze pMUM gene sequences across diverse M. ulcerans strains.
- Physical mapping of plasmids to identify deletion variants.
- Liquid chromatography-sequential mass spectrometry (LC-MS) to analyze lipid extracts and mycolactone production.
Main Results:
- Spontaneous deletions of pMUM001, ranging from 65-kb, were identified in M. ulcerans Agy99.
- Three out of nine diverse M. ulcerans strains exhibited major deletions in their mycolactone PKS loci.
- Strains with PKS deletions were incapable of producing mycolactone or related compounds.
- pMUM gene sequences showed >98% nucleotide identity across strains, mirroring chromosomal phylogeny, supporting pMUM acquisition from M. marinum.
Conclusions:
- pMUM is a defining genetic element of Mycobacterium ulcerans.
- Deletions in pMUM readily occur, leading to a loss of mycolactone production, especially without strong selective pressure.
- The presence and variability of pMUM provide insights into M. ulcerans evolution and virulence.
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