Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Constructing biological pathway models with hybrid functional Petri nets.

Atsushi Doi1, Sachie Fujita, Hiroshi Matsuno

  • 1Faculty of Science, Yamaguchi University, Japan.

In Silico Biology
|February 23, 2005
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

GWAS from a multicenter prospective study of radium-223 in bone-metastatic castration-resistant prostate cancer.

EJNMMI research·2026
Same author

Ventricular Pacing-Triggered Echo Beats via a Decremental Concealed Fasciculoventricular Pathway: Diagnosed on Surface Electrocardiogram.

JACC. Clinical electrophysiology·2026
Same author

Genome-Wide Meta-Analysis for High Myopia Provides Insights into Disease Mechanisms and Reveals a Causal Link to Primary Open-Angle Glaucoma.

Ophthalmology science·2026
Same author

Narrow QRS Tachycardia With a His-A-V Sequence and Fixed Short HA Interval: A Concealed Nodofascicular Circuit With a Bystander Atrio-Hisian Tract.

JACC. Clinical electrophysiology·2026
Same author

Transcriptome Comparison Between the Cultured and In Vivo Chick Primordial Germ Cells by SMART-Seq-Based Single-Cell RNA Sequencing.

Development, growth & differentiation·2026
Same author

HLA-DQB1*03:01 and HLA-DQA1*05:05 as key genetic determinants of infliximab response and immunogenicity in Japanese patients with inflammatory bowel disease.

Journal of gastroenterology·2026

This study details constructing hybrid functional Petri nets (HFPNs) for biological pathway modeling. It provides a step-by-step guide using the lac operon and glycolytic pathway as examples for better biological pathway analysis.

Area of Science:

  • Systems Biology
  • Computational Biology
  • Bioinformatics

Background:

  • Petri nets are established for biological pathway modeling.
  • Enhanced Petri nets like colored, stochastic, and hybrid nets offer improvements.
  • Hybrid Functional Petri Nets (HFPNs) provide a more intuitive modeling approach.

Purpose of the Study:

  • To provide a detailed, step-by-step methodology for constructing Hybrid Functional Petri Nets (HFPNs).
  • To illustrate HFPN construction using a well-known biological system.

Main Methods:

  • Detailed explanation of HFPN construction steps.
  • Application of the HFPN method to the glycolytic pathway controlled by the lac operon.

Main Results:

Related Experiment Videos

  • Demonstration of a clear, practical method for building HFPNs.
  • Successful modeling of the complex lac operon-controlled glycolytic pathway.

Conclusions:

  • The presented step-by-step method facilitates HFPN construction for biological pathways.
  • HFPNs offer an effective and intuitive approach for modeling complex biological systems like gene regulation and metabolic pathways.