Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Fitting complex potential energy surfaces to simple model potentials: application of the simplex-annealing method.

Raúl A Bustos Marún1, Eduardo A Coronado, Juan C Ferrero

  • 1INFIQC, Departamento de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba (5000) Argentina.

Journal of Computational Chemistry
|February 24, 2005
PubMed
Summary

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Hybrid nanogels by direct mixing of chitosan, tannic acid and magnetite nanoparticles: processes involved in their formation and potential catalytic properties.

Soft matter·2023
Same author

A Plasmonic Approach to Study Protein Interaction Kinetics through the Dimerization of Functionalized Ag Nanoparticles.

Scientific reports·2019
Same author

Enzyme-Free Immunoassay Using Silver Nanoparticles for Detection of Gliadin at Ultralow Concentrations.

ACS omega·2019
Same author

Colloidal gold clusters formation and chemometrics for direct SERS determination of bioanalytes in complex media.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy·2019
Same author

Nanoparticle-cell interactions induced apoptosis: a case study with nanoconjugated epidermal growth factor.

Nanoscale·2018
Same author

Design of a novel plasmonic nanoconjugated analytical tool for ultrasensitive antigen quantification.

Nanoscale·2016

A novel stochastic optimization method efficiently finds the global minimum for molecular potentials. This approach accurately models water dimer interactions, outperforming standard methods.

Area of Science:

  • Computational chemistry
  • Molecular modeling
  • Optimization algorithms

Background:

  • Accurate modeling of intermolecular potentials is crucial for understanding molecular interactions.
  • Existing optimization methods can be trapped in local minima, hindering accurate potential fitting.
  • The water dimer system presents a complex potential energy surface requiring robust fitting techniques.

Purpose of the Study:

  • To develop and implement a stochastic optimization method combining simulated annealing and simplex algorithms.
  • To apply this method for fitting the parameters of a simple model potential for the water dimer.
  • To rigorously assess the method's performance against reference potentials and standard optimization techniques.

Main Methods:

  • A hybrid stochastic optimization algorithm integrating simulated annealing and simplex methods.

Related Experiment Videos

  • Parameterization of the MCY (Muller-Clementi-Yonezawa) model potential for the water dimer.
  • Validation through comparison of minimum geometry, harmonic frequencies, and second virial coefficients with a high-quality reference potential (Feller et al.).
  • Main Results:

    • The stochastic method successfully located the global minimum of the cost function, independent of initial parameter guesses.
    • The reparameterized MCY potential showed good agreement with the reference potential in terms of geometry, frequencies, and virial coefficients.
    • The developed method demonstrated superior robustness compared to standard non-stochastic optimization techniques.

    Conclusions:

    • The combined simulated annealing and simplex stochastic optimization method is highly effective for fitting molecular model potentials.
    • This approach provides a reliable way to explore the parameter space and identify global minima for complex potential energy surfaces.
    • The parameterized MCY potential offers an accurate and efficient representation for water dimer interactions in simulations.