Related Experiment Video
Updated: Aug 19, 2026

Generating the Transcriptional Regulation View of Transcriptomic Features for Prediction Task and Dark Biomarker Detection on Small Datasets
Published on: March 1, 2024
Toxicogenomics: regulatory perspective on current position
1Department of Health, Skipton House, Elephant and Castle, London, UK. jon.battershill@dh.gsi.gov.uk
Abstract:
Published studies on the utility of toxicogenomic approaches (transcriptomics, proteomics and metabonomics) in screening for toxicological mechanisms and evaluation of dose response effects have been reviewed. The information supports the use of transcriptomics to screen for specific toxicological mechanisms for which there is an a priori hypothesis, although in some areas such as mutagenicity testing, toxicogenomics appear to have limited value for identifying mutagens. Data from such screening approaches cannot be used to exclude the possibility of toxicity. Targeted transcriptomics might be valuable for screening for specific mechanisms of toxicity considered to be irrelevant for assessing risk to humans, which would help to reduce the need for detailed testing of some chemicals. An integrated approach is suggested where data from more than one toxicogenomic approach could be used as an adjunct to conventional toxicology to assess dose-response in toxicological tests. An outline preliminary proposal for use by regulators is suggested although it is noted that more data are required before this could be formally used in a decision-making process.
Insights
Toxicogenomic approaches like transcriptomics show promise for screening toxicological mechanisms but have limitations in identifying mutagens. Integrated toxicogenomic data can supplement conventional toxicology for dose-response assessments.
Area of Science:
- Toxicology
- Genomics
- Biochemistry
Background:
- Toxicogenomic approaches, including transcriptomics, proteomics, and metabonomics, are increasingly utilized in toxicology.
- Published studies have reviewed the utility of these methods for screening toxicological mechanisms and evaluating dose-response effects.
Purpose of the Study:
- To review the utility of toxicogenomic approaches in toxicology.
- To evaluate their application in screening for toxicological mechanisms and dose-response effects.
Main Methods:
- Systematic review of published studies on toxicogenomic approaches.
- Analysis of transcriptomics, proteomics, and metabonomics data in toxicological screening.
Main Results:
- Transcriptomics can screen for specific toxicological mechanisms with a priori hypotheses, but has limited value for mutagenicity testing.
- Toxicogenomic screening data cannot exclude toxicity; targeted transcriptomics may help identify human-irrelevant mechanisms.
- An integrated approach using multiple toxicogenomic methods alongside conventional toxicology is suggested for dose-response assessment.
Conclusions:
- Toxicogenomic approaches offer valuable adjuncts to conventional toxicology for specific applications.
- Further data are required for formal regulatory use in decision-making processes.
- Integrated toxicogenomic strategies can refine chemical risk assessment and reduce extensive testing.
Related Concept Videos
Pharmacogenetics and Pharmacogenomics: Overview
Toxicity Testing in Animals
Pharmacogenomics: Identification of New Drug Targets
Toxic Reactions: Overview
Toxicity falls into two primary categories: local and systemic.
Local toxicity appears at the exposure site, such as protein denaturation caused by caustic substances.
In contrast, systemic toxicity requires the toxic agent's absorption and distribution,...
Types of Toxins
Air pollutants, primarily gases, pose significant threats to respiratory health, leading to conditions like hypoxia, lung cancer, and in extreme cases, death.
Environmental pollutants like...
Drug Toxicity: Dose-Dependent Reactions

