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Updated: Aug 4, 2026

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
Published on: January 16, 2016
Targeted Car-Parrinello molecular dynamics: elucidating double proton transfer in formic acid dimer
Phineus R L Markwick1, Nikos L Doltsinis, Dominik Marx
1European Molecular Biology Laboratory, Meyerhofstrasse 1, Heidelberg 69117, Germany. markwick@embl.de
Abstract:
The targeted molecular dynamics method, making possible the study of rare events, has been assessed in the framework of Car-Parrinello ab initio molecular dynamics. As a test case, we have studied the staggered-eclipsed rotation of ethane. The technique has subsequently been applied to investigate the nature of double proton transfer in formic acid dimer. The latter is found to follow a concerted transfer mechanism involving an essentially planar transition state. A "funnel-like region" of the potential energy surface is identified, where floppy intermolecular modes stiffen upon approaching the transition state.
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