[Detection of hepatitis A virus in environmental samples by coupled reverse transcription and polymerase chain...

A direct reverse transcription coupled with polymerase chain reaction (RT-PCR) was used to detect HAV-seeded sea water, coastal sediment and Arca subcrenata, HAV strain treated by different kind of disinfection, and naturally occurring HAV in Arca subcrenata. The results showed that HAV could be detected in HAV-seeded sea water, coastal sediment and Arca subcrenata. HAV could also be detected in HAV strain disinfected by phenol, suggesting that inactive HAV could also show positive PCR. Only Arca subcrenata collected from Shanghai in 1988 showed positive result by RCR, but negative by immunofluorescence at the same time. This result demonstrated that HAV was not infectious owing to long time storage. The author's method has the advantage of involving fewer manipulations.