Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

PathoPlant: a database on plant-pathogen interactions.

Lorenz Bülow1, Martin Schindler, Claudia Choi

  • 1Institute for Genetics, Technical University of Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany. l.buelow@tu-braunschweig.de

In Silico Biology
|March 9, 2005
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Isolation and characterization of Leptospira licerasiae in Austrian swine - a first-time case report in Europe.

BMC veterinary research·2024
Same author

Genomic distribution and context dependent functionality of novel WRKY transcription factor binding sites.

BMC genomics·2022
Same author

A dialogue-like cell communication mechanism is conserved in filamentous ascomycete fungi and mediates interspecies interactions.

Proceedings of the National Academy of Sciences of the United States of America·2022
Same author

SoSyM reflections: the 2021 "state of the journal" report.

Software and systems modeling·2022
Same author

SoSyM reflections: the 2020 "State of the Journal" report.

Software and systems modeling·2021
Same author

Unusual DNA-binding properties of the Arabidopsis thaliana WRKY50 transcription factor at target gene promoters.

Plant cell reports·2020
Same journal

Regulatory Effects of Cooperativity and Signal Profile on Adaptive Dynamics in Incoherent Feedforward Loop Networks.

In silico biology·2025
Same journal

scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data.

In silico biology·2023
Same journal

Modelling speciation: Problems and implications.

In silico biology·2022
Same journal

Where Do CABs Exist? Verification of a specific region containing concave Actin Bundles (CABs) in a 3-Dimensional confocal image.

In silico biology·2022
Same journal

Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases.

In silico biology·2022
Same journal

Multiscale modeling of tumor response to vascular endothelial growth factor (VEGF) inhibitor.

In silico biology·2022
See all related articles

PathoPlant is a new database for plant pathogen interactions. It organizes data on molecular components and reactions, aiding research into plant defense mechanisms and signaling pathways.

Area of Science:

  • Plant Science
  • Molecular Biology
  • Bioinformatics

Background:

  • Plant defense mechanisms rely on pathogen recognition and signal transduction.
  • Comparative studies of plant-pathogen interactions require accessible, organized data.
  • Existing data on plant pathogenesis signaling pathways are fragmented.

Purpose of the Study:

  • To develop a comprehensive relational database, PathoPlant, for plant-pathogen interactions.
  • To provide a centralized resource for components and reactions in plant defense signaling.
  • To facilitate comparative analysis of different pathogen response pathways.

Main Methods:

  • Developed PathoPlant as a relational database.
  • Organized data on organism level (plant, pathogen, interaction) and molecular level (molecule, reaction, location).

Related Experiment Videos

  • Modeled signal transduction pathways as sequences of molecules and reactions, linking to external databases (SWISS-PROT, GenBank, PubMed, TRANSFAC).

    • Main Results:

    • PathoPlant successfully integrates diverse data on plant-pathogen interactions.
    • The database structures information from organism to molecular levels.
    • Inter-database linking enhances data accessibility and utility.

    Conclusions:

    • PathoPlant serves as an indispensable tool for researchers studying plant immunity.
    • The database facilitates a broad overview and comparative studies of plant-pathogen signaling.
    • Web accessibility promotes wider use in plant science research.