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Updated: Aug 19, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
Vitamin E mediates cell signaling and regulation of gene expression
Angelo Azzi1, René Gysin, Petra Kempná
1Institute of Biochemistry and Molecular Biology, University of Bern, Bühlstrasse 28, 3012 Bern, Switzerland. angelo.azzi@mci.unibe.ch
Abstract:
alpha-Tocopherol modulates two major signal transduction pathways centered on protein kinase C and phosphatidylinositol 3-kinase. Changes in the activity of these key kinases are associated with changes in cell proliferation, platelet aggregation, and NADPH-oxidase activation. Several genes are also regulated by tocopherols partly because of the effects of tocopherol on these two kinases, but also independently of them. These genes can be divided in five groups: Group 1. Genes that are involved in the uptake and degradation of tocopherols: alpha-tocopherol transfer protein, cytochrome P450 (CYP3A), gamma-glutamyl-cysteine synthetase heavy subunit, and glutathione-S-transferase. Group 2. Genes that are implicated with lipid uptake and atherosclerosis: CD36, SR-BI, and SR-AI/II. Group 3. Genes that are involved in the modulation of extracellular proteins: tropomyosin, collagen-alpha-1, MMP-1, MMP-19, and connective tissue growth factor. Group 4. Genes that are connected to adhesion and inflammation: E-selectin, ICAM-1 integrins, glycoprotein IIb, IL-2, IL-4, IL-1b, and transforming growth factor-beta (TGF-beta). Group 5. Genes implicated in cell signaling and cell cycle regulation: PPAR-gamma, cyclin D1, cyclin E, Bcl2-L1, p27, CD95 (APO-1/Fas ligand), and 5a-steroid reductase type 1. The transcription of p27, Bcl2, alpha-tocopherol transfer protein, cytochrome P450 (CYP3A), gamma-glutamyl-cysteine sythetase heavy subunit, tropomyosin, IL-2, and CTGF appears to be upregulated by one or more tocopherols. All the other listed genes are downregulated. Gene regulation by tocopherols has been associated with protein kinase C because of its deactivation by alpha-tocopherol and its contribution in the regulation of a number of transcription factors (NF-kappaB, AP1). A direct participation of the pregnane X receptor (PXR) / retinoid X receptor (RXR) has been also shown. The antioxidant-responsive element (ARE) and the TGF-beta-responsive element (TGF-beta-RE) appear in some cases to be implicated as well.
Insights
Alpha-tocopherol influences cell signaling pathways, affecting cell proliferation and gene expression. This vitamin E form regulates genes involved in tocopherol metabolism, lipid uptake, extracellular proteins, inflammation, and cell cycle, impacting overall cellular function.
Area of Science:
- Biochemistry and Molecular Biology
- Cell Biology
- Nutritional Science
Background:
- Alpha-tocopherol, a major form of vitamin E, plays a crucial role in cellular processes.
- Its influence extends to key signal transduction pathways, including protein kinase C (PKC) and phosphatidylinositol 3-kinase (PI3K).
- Dysregulation of these pathways is linked to various cellular functions like proliferation, platelet aggregation, and NADPH-oxidase activation.
Purpose of the Study:
- To elucidate the comprehensive gene regulatory effects of alpha-tocopherol.
- To identify specific genes and pathways modulated by alpha-tocopherol, independent of or in conjunction with its effects on PKC and PI3K.
- To understand the mechanisms underlying tocopherol-mediated gene expression changes.
Main Methods:
- Analysis of gene expression changes in response to alpha-tocopherol treatment.
- Categorization of regulated genes into functional groups (e.g., tocopherol metabolism, lipid uptake, extracellular proteins, inflammation, cell signaling).
- Investigation of the involvement of signaling pathways (PKC, PI3K) and transcription factors (NF-kappaB, AP1, PXR/RXR) in tocopherol-induced gene regulation.
Main Results:
- Alpha-tocopherol modulates gene expression across five distinct functional groups, impacting tocopherol uptake/degradation, lipid metabolism, extracellular matrix, inflammation, and cell cycle regulation.
- Specific genes like p27, Bcl2, alpha-tocopherol transfer protein, CYP3A, gamma-glutamyl-cysteine synthetase, tropomyosin, IL-2, and CTGF show upregulated transcription.
- Other genes are downregulated, and regulation is linked to PKC inhibition, transcription factor activity, and potentially PXR/RXR pathways and ARE/TGF-beta-RE elements.
Conclusions:
- Alpha-tocopherol exerts broad effects on cellular function through intricate gene regulation.
- These regulatory actions involve modulation of key signaling kinases and transcription factors, influencing diverse biological processes.
- Understanding these mechanisms provides insights into the physiological roles of vitamin E in health and disease.
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