Related Experiment Video
Updated: Aug 19, 2026

Isolation of mRNAs Associated with Yeast Mitochondria to Study Mechanisms of Localized Translation
Published on: March 14, 2014
Human mitochondrial mRNAs are stabilized with polyadenylation regulated by mitochondria-specific poly(A) polymerase
Takashi Nagaike1, Tsutomu Suzuki, Takayuki Katoh
1Department of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba Prefecture, Japan.
Abstract:
Mammalian mitochondrial (mt) mRNAs have short poly(A) tails at their 3' termini that are post-transcriptionally synthesized by mt poly(A) polymerase (PAP). The polyadenylation of mt mRNAs is known to be a key process needed to create UAA stop codons that are not encoded in mtDNA. In some cases, polyadenylation is required for the tRNA maturation by editing of its 3' terminus. However, little is known about the functional roles the poly(A) tail of mt mRNAs plays in mt translation and RNA turnover. Here we show human mt PAP (hmtPAP) and human polynucleotide phosphorylase (hPNPase) control poly(A) synthesis in human mitochondria. Partial inactivation of hmtPAP by RNA interference using small interfering RNA in HeLa cells resulted in shortened poly(A) tails and decreased steady state levels of some mt mRNAs as well as their translational products. Moreover, knocking down hmtPAP generated markedly defective mt membrane potentials and reduced oxygen consumption. In contrast, knocking down hPNPase showed significantly extended poly(A) tails of mt mRNAs. These results demonstrate that the poly(A) length of human mt mRNAs is controlled by polyadenylation by hmtPAP and deadenylation by hPNPase, and polyadenylation is required for the stability of mt mRNAs.
Insights
Human mitochondrial poly(A) polymerase (PAP) controls mRNA polyadenylation, crucial for mitochondrial gene expression and function. Its inactivation shortens poly(A) tails, impacting mRNA stability and cellular respiration.
Area of Science:
- Mitochondrial biology
- Gene expression regulation
- Molecular genetics
Background:
- Mammalian mitochondrial mRNAs possess short 3' poly(A) tails synthesized by mitochondrial poly(A) polymerase (PAP).
- Polyadenylation is essential for forming UAA stop codons and tRNA maturation.
- The functional roles of poly(A) tails in mitochondrial mRNA translation and turnover remain largely unelucidated.
Purpose of the Study:
- To investigate the roles of human mitochondrial PAP (hmtPAP) and human polynucleotide phosphorylase (hPNPase) in controlling mitochondrial mRNA poly(A) synthesis.
- To elucidate the functional significance of poly(A) tail length in mitochondrial gene expression and cellular respiration.
Main Methods:
- RNA interference (RNAi) using small interfering RNA (siRNA) to partially inactivate hmtPAP in HeLa cells.
- Analysis of poly(A) tail lengths, steady-state mRNA levels, and translational products.
- Measurement of mitochondrial membrane potential and oxygen consumption.
Main Results:
- Partial inactivation of hmtPAP led to shortened poly(A) tails, decreased steady-state levels of specific mitochondrial mRNAs, and reduced translational products.
- Knockdown of hmtPAP resulted in defective mitochondrial membrane potentials and diminished oxygen consumption.
- Knockdown of hPNPase caused significantly extended poly(A) tails on mitochondrial mRNAs.
Conclusions:
- The poly(A) length of human mitochondrial mRNAs is regulated by hmtPAP-mediated polyadenylation and hPNPase-mediated deadenylation.
- Polyadenylation is essential for the stability of mitochondrial mRNAs.
- Mitochondrial mRNA polyadenylation plays a critical role in maintaining mitochondrial function, including membrane potential and cellular respiration.
Related Concept Videos
RNA Stability
mRNA Stability and Gene Expression
Cis-acting Elements involved in mRNA stability
mRNA Stability and Gene Expression
Cis-acting Elements involved in mRNA stability
Chromatin Structure Regulates pre-mRNA Processing
The chromatin structure, especially...
Nuclear Export of mRNA
Pre-mRNA Processing: Modification of pre-mRNA Ends
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps the cell...

