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A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
Using the biological taxonomy to access biological literature with PathBinderH
J Ding1, K Viswanathan, D Berleant
1Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA.
Bioinformatics (Oxford, England)
|March 17, 2005
Summary
PathBinderH is a tool for retrieving sentences and abstracts from PubMed. It allows users to limit searches by specifying biological taxa, initially for plants but extensible to all taxonomy.
Area of Science:
- Bioinformatics
- Computational Biology
- Genomics
Background:
- PathBinderH is a publicly available resource.
- Source code and databases are available upon request.
Purpose of the Study:
- To develop a tool for querying biological literature.
- To enable taxon-specific literature searches.
Main Methods:
- Utilizes PubMed as a data source.
- Implements a query system for sentence and abstract retrieval.
- Incorporates biological taxonomy for search filtering.
Main Results:
- PathBinderH retrieves sentences and abstracts from PubMed.
- Search results can be limited by specified biological taxa.
- The system is currently configured for plant taxa but is extensible.
Conclusions:
- PathBinderH offers a novel approach to literature mining in biology.
- The taxon-specific search functionality enhances the precision of information retrieval.
- The tool has potential applications across various biological disciplines.
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