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Updated: Aug 19, 2026

Infinium Assay for Large-scale SNP Genotyping Applications
Published on: November 19, 2013
Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays
Hajime Matsuzaki1, Shoulian Dong, Halina Loi
1Affymetrix, Inc., 3380 Central Expressway, Santa Clara, California 95051, USA.
Abstract:
We present a genotyping method for simultaneously scoring 116,204 SNPs using oligonucleotide arrays. At call rates >99%, reproducibility is >99.97% and accuracy, as measured by inheritance in trios and concordance with the HapMap Project, is >99.7%. Average intermarker distance is 23.6 kb, and 92% of the genome is within 100 kb of a SNP marker. Average heterozygosity is 0.30, with 105,511 SNPs having minor allele frequencies >5%.
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