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Updated: Aug 18, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
Mutations of PIK3CA in gastric adenocarcinoma
Vivian Sze Wing Li1, Chi Wai Wong, Tsun Leung Chan
1Department of Pathology, The University of Hong Kong, Queen Mary Hospital, Hong Kong. vswli@hkucc.hku.hk
Background:
Activation of the phosphatidylinositol 3-kinase (PI3K) through mutational inactivation of PTEN tumour suppressor gene is common in diverse cancer types, but rarely reported in gastric cancer. Recently, mutations in PIK3CA, which encodes the p110alpha catalytic subunit of PI3K, have been identified in various human cancers, including 3 of 12 gastric cancers. Eighty percent of these reported mutations clustered within 2 regions involving the helical and kinase domains. In vitro study on one of the "hot-spot" mutants has demonstrated it as an activating mutation.
Methods:
Based on these data, we initiated PIK3CA mutation screening in 94 human gastric cancers by direct sequencing of the gene regions in which 80% of all the known PIK3CA mutations were found. We also examined PIK3CA expression level by extracting data from the previous large-scale gene expression profiling study. Using Significance Analysis of Microarrays (SAM), we further searched for genes that show correlating expression with PIK3CA.
Results:
We have identified PIK3CA mutations in 4 cases (4.3%), all involving the previously reported hotspots. Among these 4 cases, 3 tumours demonstrated microsatellite instability and 2 tumours harboured concurrent KRAS mutation. Data extracted from microarray studies showed an increased expression of PIK3CA in gastric cancers when compared with the non-neoplastic gastric mucosae (p < 0.001). SAM further identified 2910 genes whose expression levels were positively associated with that of PIK3CA.
Conclusion:
Our data suggested that activation of the PI3K signalling pathway in gastric cancer may be achieved through up-regulation or mutation of PIK3CA, in which the latter may be a consequence of mismatch repair deficiency.
Insights
PIK3CA mutations and increased expression are implicated in gastric cancer, potentially linked to mismatch repair deficiency. This suggests PI3K pathway activation via PIK3CA in this cancer type.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Phosphatidylinositol 3-kinase (PI3K) pathway activation is common in cancers, often via PTEN inactivation, but less so in gastric cancer.
- Mutations in PIK3CA, encoding the p110alpha catalytic subunit of PI3K, are found in various cancers, with 80% clustering in helical and kinase domains.
- In vitro studies confirm these PIK3CA mutations as activating.
Purpose of the Study:
- To screen for PIK3CA mutations in gastric cancer.
- To evaluate PIK3CA expression levels in gastric tumors.
- To identify genes with expression correlating to PIK3CA.
Main Methods:
- Direct sequencing of PIK3CA hotspots in 94 gastric cancers.
- Analysis of PIK3CA expression using existing gene expression profiling data.
- Significance Analysis of Microarrays (SAM) to find genes correlated with PIK3CA expression.
Main Results:
- PIK3CA mutations were identified in 4.3% of gastric cancers, all at known hotspots.
- Three mutated tumors showed microsatellite instability, and two had concurrent KRAS mutations.
- PIK3CA expression was significantly increased in gastric cancers compared to normal tissue (p < 0.001), with 2910 positively associated genes identified.
Conclusions:
- PI3K pathway activation in gastric cancer can occur through PIK3CA up-regulation or mutation.
- PIK3CA mutations may result from mismatch repair deficiency in gastric cancer.
- These findings highlight PIK3CA as a potential target in gastric cancer therapy.
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