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Updated: Aug 18, 2026

Wild-type Blocking PCR Combined with Sanger Sequencing for Detection of Low-frequency Somatic Mutation
Published on: August 23, 2024
[Detection of a non-standard mutation in the ret protoncogene by site directed mutagenesis]
Sebastián Real1, Laura Gómez, Héctor Perinetti
1Laboratorio de Biología Celular y Molecular, IHEM-CONICET, Mendoza, Argentina.
Abstract:
MEN2A is an autosomic dominant disease, characterized by medullary thyroid cancer, pheochromocytoma and parathyroid hyperplasia. Mutations in the ret proto-oncogene are associated with this disease, with almost 100% of penetrance. The gene, situated on chromosome 10q11.2, codes for a transmembrane protein with a tyrosinkinase-like receptor function. Mutations that affect its extracellular domain, stimulate spontaneous homodimerization and elevate the basal tyrosinkinase activity. The codon 634 of the gene is considered a hot-spot site, since it is mutated in 85% of the MEN2A families. Our group developed in 2002 an indirect and costless strategy to detect alterations in this site. We present a family suspected of having MEN2A. We applied our PCR based indirect strategy on the DNA of the index patient and found that there was no mutation in that site. Posterior sequencing of exon 10 and 11 confirmed that the mutation affecting this family was in codon 611. Thus, we developed a new costless family-specific strategy based on mutagenic PCR and enzymatic cuts to diagnose all the family members. A seven-year old boy with this mutation was preventively thyroidectomized. In this way, combining the indirect methodology for codon 634 previously developed by our group, and a posterior family-specific mutation detection strategy, we were able to diagnose and intervene presymptomatically the family members, avoiding sending all the samples to foreign centers.
Insights
We developed a cost-effective genetic testing strategy for Multiple Endocrine Neoplasia type 2A (MEN2A). This method enables early diagnosis and presymptomatic intervention for affected family members, preventing costly overseas testing.
Area of Science:
- Genetics
- Oncology
- Endocrinology
Background:
- Multiple Endocrine Neoplasia type 2A (MEN2A) is an autosomal dominant disorder associated with medullary thyroid cancer, pheochromocytoma, and parathyroid hyperplasia.
- Mutations in the ret proto-oncogene are the primary cause of MEN2A, exhibiting nearly complete penetrance.
- Codon 634 in the ret gene is a known hot-spot mutation site, implicated in 85% of MEN2A families.
Purpose of the Study:
- To develop and implement a cost-effective, family-specific genetic diagnostic strategy for MEN2A.
- To enable presymptomatic diagnosis and intervention in a family with a suspected MEN2A mutation.
- To confirm a novel ret proto-oncogene mutation site in a MEN2A-affected family.
Main Methods:
- Initial application of a previously developed indirect PCR-based strategy targeting the codon 634 hot-spot.
- Sequencing of exons 10 and 11 of the ret proto-oncogene to identify the specific mutation.
- Development of a new, cost-effective family-specific strategy using mutagenic PCR and enzymatic digestion for diagnosis.
Main Results:
- The index patient's DNA showed no mutation at the codon 634 hot-spot.
- Sequencing revealed a novel mutation in codon 611 of the ret proto-oncogene within the family.
- The newly developed family-specific strategy successfully diagnosed all family members.
- A seven-year-old boy with the identified mutation underwent a preventive thyroidectomy.
Conclusions:
- A combined approach of indirect testing for known hot-spots and family-specific mutation detection is effective for MEN2A diagnosis.
- Presymptomatic diagnosis and intervention, such as thyroidectomy, can be achieved through targeted genetic strategies.
- The developed methods offer a cost-effective alternative to sending samples for genetic analysis abroad, facilitating timely clinical management.
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