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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Sp1 and Sp3 regulate basal transcription of the human CYP2F1 gene
Jie Wan1, Brian A Carr, N Shane Cutler
1Department of Pharmacology and Toxicology, 30 South 2000 East, Room 201, University of Utah, Salt Lake City, UT 84112-5820. gyost@pharm.utah.edu.
Abstract:
Selective transcription of the human CYP2F1 gene in lung tissues may control the susceptibilities of this organ to diverse pneumotoxicants and lung carcinogens. However, the mechanisms responsible for CYP2F1 organ-selective transcription have not been elucidated. The objectives of the current studies were to identify and characterize basal transcription elements within the TATA-less promoter region of CYP2F1. Four putative Sp1-like sites were identified in the CYP2F1 promoter. Competitive electrophoretic mobility shift assay analysis with mutated oligonucleotide probes and lung A549 cell nuclear extract, along with supershift studies using antibodies to either Sp1 or Sp3 proteins, demonstrated that all four sites formed three specific protein-DNA complexes. Mutations in any of the four core Sp1-like motifs abolished protein-DNA binding. Western blot analysis of both human tissues and cells showed that Sp1 was considerably higher in lung than liver and that Sp3 was much higher in liver than lung. Promoter activation of a luciferase reporter construct was sequentially increased by addition of each of the four Sp1-like motifs in lung A549 cells but not in liver HepG2 cells. Cotransfection of a Sp1 expression vector with the reporter construct dramatically increased luciferase activity in either A549 cells or Sp1-deficient Drosophila Schneider line 2 (SL-2) cells. However, similar cotransfections with an Sp3 expression vector failed to increase activity. Cotransfection of both the Sp1 and Sp3 expression vectors considerably decreased Sp1-mediated activity in A549 cells and abolished activity in SL-2 cells. Thus, these studies demonstrated that four Sp1-dependent proximal promoter elements drive organ-selective CYP2F1 gene transcription, and that Sp1 and Sp3 factors interact to modulate constitutive CYP2F1 transcription in lung cells.
Insights
This study identifies four Sp1-dependent elements in the CYP2F1 gene promoter, explaining its selective transcription in lung tissues. Sp1 and Sp3 protein interactions modulate this lung-specific gene expression.
Area of Science:
- Molecular Biology
- Genetics
- Toxicology
Background:
- The human CYP2F1 gene's selective transcription in lung tissue influences susceptibility to pneumotoxicants and carcinogens.
- Mechanisms underlying CYP2F1 organ-selective transcription remain largely unknown.
Purpose of the Study:
- Identify and characterize basal transcription elements in the TATA-less CYP2F1 promoter.
- Elucidate the role of Sp1 and Sp3 proteins in CYP2F1 transcription.
Main Methods:
- Analysis of the CYP2F1 promoter region, including identification of Sp1-like sites.
- Competitive electrophoretic mobility shift assays (EMSA) and supershift studies using nuclear extracts and antibodies.
- Western blot analysis to determine Sp1 and Sp3 protein levels in human tissues and cells.
- Luciferase reporter assays with mutated promoter constructs and Sp1/Sp3 expression vectors in lung (A549) and liver (HepG2) cells, as well as Drosophila SL-2 cells.
Main Results:
- Four Sp1-like binding sites were identified in the CYP2F1 promoter, essential for DNA-protein complex formation.
- Sp1 protein levels were higher in lung tissue, while Sp3 levels were higher in liver.
- Sp1-dependent promoter activation was observed in lung cells but not liver cells.
- Sp1 significantly enhanced reporter gene activity, whereas Sp3 did not; Sp3 notably inhibited Sp1-mediated activity.
Conclusions:
- Four Sp1-dependent proximal promoter elements drive organ-selective CYP2F1 gene transcription.
- Sp1 and Sp3 proteins interact to modulate constitutive CYP2F1 transcription in lung cells, contributing to lung-specific gene expression patterns.
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