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Published on: September 18, 2013
Discovery of epigenetically masked tumor suppressor genes in endometrial cancer
Noriyuki Takai1, Norihiko Kawamata, Christine S Walsh
1Division of Hematology/Oncology, Cedars-Sinai Medical Center/University of California at Los Angeles School of Medicine, 8700 Beverly Boulevard, Los Angeles, CA 90048, USA.
Abstract:
Realization that many tumor suppressor genes are silenced by epigenetic mechanisms has stimulated the discovery of novel tumor suppressor genes. We used a variety of research tools to search for genes that are epigenetically silenced in human endometrial cancers. Changes in global gene expression of the endometrial cancer cell line Ishikawa was analyzed after treatment with the demethylating agent 5-aza-2'-deoxycytidine combined with the histone deacetylase inhibitor suberoylanilide bishydroxamide. By screening over 22,000 genes, candidate tumor suppressor genes were identified. Additional microarray analysis and real-time reverse transcription-PCR of normal and cancerous endometrial samples and search for CpG islands further refined the list. Tazarotene-induced gene-1 (Tig1) and CCAAT/enhancer binding protein-alpha (C/ebpalpha) were chosen for further study. Expression of both genes was low in endometrial cancer cell lines and clinical samples but high in normal endometrial tissues. Bisulfite sequencing, restriction analysis, and/or methylation-specific PCR revealed aberrant methylation of the CpG island in the Tig1 gene of all 6 endometrial cancer cell lines examined and 4 of 18 clinical endometrial cancers, whereas the C/ebpalpha promoter remained unmethylated in endometrial cancers. Chromatin immunoprecipitation showed increased acetylated histone H3 bound to both Tig1 and C/ebpalpha genes after treatment with 5-aza-2'-deoxycytidine and/or suberoylanilide bishydroxamide. Forced expression of either TIG1 or C/EBPalpha led to significant growth reduction of Ishikawa cells. Our data suggest that C/ebpalpha and Tig1 function as tumor suppressor proteins in endometrial cancers and that their reexpression may be a therapeutic target.
Insights
Researchers identified two novel tumor suppressor genes, Tazarotene-induced gene-1 (Tig1) and CCAAT/enhancer binding protein-alpha (C/ebpalpha), epigenetically silenced in endometrial cancer. Reinstating these genes may offer a new therapeutic strategy for this cancer.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Epigenetic silencing of tumor suppressor genes is a key mechanism in cancer development.
- Identifying novel epigenetically silenced tumor suppressor genes is crucial for understanding endometrial cancer and developing targeted therapies.
Purpose of the Study:
- To identify novel tumor suppressor genes epigenetically silenced in human endometrial cancers.
- To investigate the role of Tazarotene-induced gene-1 (Tig1) and CCAAT/enhancer binding protein-alpha (C/ebpalpha) as potential tumor suppressors in endometrial cancer.
Main Methods:
- Global gene expression analysis of endometrial cancer cells treated with epigenetic modifying agents (5-aza-2'-deoxycytidine and suberoylanilide bishydroxamide).
- Screening of over 22,000 genes, followed by microarray analysis, real-time RT-PCR, and CpG island analysis.
- Bisulfite sequencing, methylation-specific PCR, and chromatin immunoprecipitation to assess gene methylation and histone acetylation.
- Forced expression studies in Ishikawa endometrial cancer cells to evaluate the functional impact of Tig1 and C/ebpalpha.
Main Results:
- Tig1 and C/ebpalpha showed significantly reduced expression in endometrial cancer cell lines and clinical samples compared to normal tissues.
- Aberrant methylation of the Tig1 gene promoter was observed in endometrial cancer cell lines and clinical samples.
- Epigenetic treatment increased histone H3 acetylation at both Tig1 and C/ebpalpha genes.
- Forced expression of Tig1 or C/ebpalpha suppressed the growth of Ishikawa endometrial cancer cells.
Conclusions:
- Tig1 and C/ebpalpha function as tumor suppressor genes in endometrial cancer.
- Epigenetic silencing contributes to the loss of Tig1 and C/ebpalpha expression in endometrial cancer.
- Re-expression of Tig1 and C/ebpalpha represents a potential therapeutic strategy for endometrial cancer.
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