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Updated: Aug 18, 2026

Small-Scale Plasma Membrane Preparation for the Analysis of Candida albicans Cdr1-mGFPHis
Published on: June 13, 2021
Expression of the CDR1 efflux pump in clinical Candida albicans isolates is controlled by a negative regulatory
Naseem Akhtar Gaur1, Raman Manoharlal, Preeti Saini
1Membrane Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, India.
Abstract:
Resistance to azole antifungal drugs in clinical isolates of the human fungal pathogen Candida albicans is often caused by constitutive overexpression of the CDR1 gene, which encodes a multidrug efflux pump of the ABC transporter superfamily. To understand the relevance of a recently identified negative regulatory element (NRE) in the CDR1 promoter for the control of CDR1 expression in the clinical scenario, we investigated the effect of mutation or deletion of the NRE on CDR1 expression in two matched pairs of azole-sensitive and resistant clinical isolates of C. albicans. Expression of GFP or lacZ reporter genes from the wild type CDR1 promoter was much higher in the azole-resistant C. albicans isolates than in the azole-susceptible isolates, reflecting the known differences in CDR1 expression in these strains. Deletion or mutation of the NRE resulted in enhanced reporter gene expression in azole-sensitive strains, but did not further increase the already high CDR1 promoter activity in the azole-resistant strains. In agreement with these findings, electrophoretic mobility shift assays showed a reduced binding to the NRE of nuclear extracts from the resistant C. albicans isolates as compared with extracts from the sensitive isolates. These results demonstrate that the NRE is involved in maintaining CDR1 expression at basal levels and that this repression is overcome in azole-resistant clinical C. albicans isolates, resulting in constitutive CDR1 overexpression and concomitant drug resistance.
Insights
A negative regulatory element (NRE) in the Candida albicans CDR1 gene normally keeps its expression low. In drug-resistant strains, this NRE is less active, leading to high CDR1 expression and azole resistance.
Area of Science:
- Medical Mycology
- Molecular Biology
- Antimicrobial Resistance
Background:
- Azole antifungal drug resistance in Candida albicans is a significant clinical challenge.
- This resistance is frequently linked to the overexpression of the CDR1 gene, encoding an ABC transporter efflux pump.
- The role of regulatory elements within the CDR1 promoter in clinical resistance is not fully understood.
Purpose of the Study:
- To investigate the functional significance of a negative regulatory element (NRE) in the CDR1 promoter.
- To determine the NRE's role in controlling CDR1 expression in clinical isolates of Candida albicans.
- To elucidate the NRE's involvement in azole drug resistance.
Main Methods:
- Utilized reporter gene assays (GFP and lacZ) to measure CDR1 promoter activity.
- Generated and analyzed strains with mutations or deletions in the CDR1 promoter's NRE.
- Employed electrophoretic mobility shift assays (EMSA) to assess NRE-DNA binding by nuclear factors.
Main Results:
- CDR1 promoter activity was significantly higher in azole-resistant C. albicans isolates compared to azole-sensitive isolates.
- Deletion or mutation of the NRE increased reporter gene expression in sensitive strains but not in resistant strains.
- EMSA revealed reduced binding of nuclear factors to the NRE in resistant isolates compared to sensitive isolates.
Conclusions:
- The NRE actively represses CDR1 gene expression, maintaining basal levels.
- This repression is diminished or overcome in azole-resistant clinical isolates of C. albicans.
- Dysfunctional NRE contributes to constitutive CDR1 overexpression and azole drug resistance in Candida albicans.
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