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Updated: Aug 9, 2026

Silencing of BRCA2 to Identify Novel BRCA2-regulated Biological Functions in Cultured Human Cells
Published on: August 12, 2015
BRCA1/BARD1 inhibition of mRNA 3' processing involves targeted degradation of RNA polymerase II
Frida E Kleiman1, Foon Wu-Baer, Danae Fonseca
1Department of Biological Sciences, Columbia University, New York, New York 10027, USA.
Abstract:
Mammalian cells exhibit a complex response to DNA damage. The tumor suppressor BRCA1 and associated protein BARD1 are thought to play an important role in this response, and our previous work demonstrated that this includes transient inhibition of the pre-mRNA 3' processing machinery. Here we provide evidence that this inhibition involves proteasomal degradation of a component necessary for processing, RNA polymerase II (RNAP II). We further show that RNAP IIO, the elongating form of the enzyme, is a specific in vitro target of the BRCA1/BARD1 ubiquitin ligase activity. Significantly, siRNA-mediated knockdown of BRCA1 and BARD1 resulted in stabilization of RNAP II after DNA damage. In addition, inhibition of 3' cleavage induced by DNA damage was reverted in extracts of BRCA1-, BARD1-, or BRCA1/BARD1-depleted cells. We also describe corresponding changes in the nuclear localization and/or accumulation of these factors following DNA damage. Our results support a model in which a BRCA1/BARD1-containing complex functions to initiate degradation of stalled RNAP IIO, inhibiting the coupled transcription-RNA processing machinery and facilitating repair.
Insights
The BRCA1/BARD1 complex degrades RNA polymerase II (RNAP II) to inhibit transcription-RNA processing during DNA damage response. This mechanism facilitates DNA repair in mammalian cells.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- Mammalian cells have complex DNA damage responses.
- BRCA1 and BARD1 are tumor suppressors involved in DNA repair.
- Previous work showed BRCA1/BARD1 inhibits pre-mRNA 3' processing.
Purpose of the Study:
- To investigate the mechanism by which BRCA1/BARD1 inhibits pre-mRNA 3' processing.
- To identify the specific component targeted by BRCA1/BARD1.
- To elucidate the role of RNAP II degradation in DNA damage response.
Main Methods:
- In vitro assays using purified proteins.
- siRNA-mediated knockdown of BRCA1 and BARD1.
- Analysis of nuclear localization and protein accumulation after DNA damage.
Main Results:
- BRCA1/BARD1 targets RNA polymerase II (RNAP II) for proteasomal degradation.
- RNAP IIO is a specific in vitro target of BRCA1/BARD1 ubiquitin ligase activity.
- BRCA1/BARD1 depletion stabilizes RNAP II and reverts processing inhibition after DNA damage.
Conclusions:
- BRCA1/BARD1 complex initiates degradation of stalled RNAP IIO.
- This process inhibits coupled transcription-RNA processing.
- The mechanism facilitates DNA repair following DNA damage.
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