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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Poly(C) binding protein family is a transcription factor in mu-opioid receptor gene expression
Sung-Su Kim1, Krishan K Pandey, Hack Sun Choi
1Department of Pharmacology, University of Minnesota Medical School, 6-120 Jackson Hall, 321 Church St. SE, Minneapolis, MN 55455, USA. kimxx558@umn.edu
Abstract:
The mouse mu-opioid receptor (MOR) gene has two promoters, referred to as distal and proximal promoter. Previously, our colleagues reported that a 26-base pair (bp) cis-acting element of the mouse MOR gene activates MOR gene expression. Here, we report the cloning of four members of the poly(C) binding protein (PCBP) family and show that the 26-bp polypyrimidine stretch in MOR proximal promoter interacts with these PCBPs and activates MOR transcription. The PCBPs bind not only to single-stranded but also to double-stranded DNA. The nuclear run-off assay and semiquantitative RT-PCR shows that PCBPs enhance the transcription rate of MOR gene. Furthermore, we performed refined mapping to elucidate the core region (-317/-304) involved in mediating the PCBP-induced MOR promoter activity. Decoy oligonucleotides against the polypyrimidine stretch inhibit the PCBP-induced MOR promoter activity, thereby reconfirming the role of this element in regulating MOR promoter activity. Chromatin immunoprecipitation assay confirmed the interaction of PCBPs with MOR promoter in vivo. In conclusion, we demonstrate that PCBPs act as a transcription factor and positively regulate MOR gene expression in NMB cells.
Insights
Poly(C) binding proteins (PCBPs) interact with the mouse mu-opioid receptor (MOR) gene's promoter, activating MOR transcription. These transcription factors enhance MOR gene expression in NMB cells.
Area of Science:
- Molecular Biology
- Neuroscience
- Gene Regulation
Background:
- The mouse mu-opioid receptor (MOR) gene possesses two promoters: distal and proximal.
- A previously identified 26-base pair (bp) cis-acting element in the mouse MOR gene activates MOR gene expression.
Purpose of the Study:
- To identify proteins interacting with the 26-bp polypyrimidine stretch in the MOR proximal promoter.
- To elucidate the role of these interacting proteins in regulating MOR gene transcription.
Main Methods:
- Cloning of four poly(C) binding protein (PCBP) family members.
- Nuclear run-off assays and semiquantitative RT-PCR to assess transcription rates.
- Chromatin immunoprecipitation assays to confirm in vivo interactions.
Main Results:
- Four PCBP family members were cloned and shown to interact with the 26-bp polypyrimidine stretch in the MOR proximal promoter.
- PCBPs bind to both single- and double-stranded DNA, enhancing MOR gene transcription rates.
- Refined mapping identified a core region (-317/-304) crucial for PCBP-induced MOR promoter activity, confirmed by decoy oligonucleotides.
Conclusions:
- Poly(C) binding proteins (PCBPs) function as transcription factors that positively regulate mouse mu-opioid receptor (MOR) gene expression.
- The interaction between PCBPs and the MOR promoter is essential for MOR gene transcription in NMB cells.
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