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Updated: Aug 17, 2026

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
A genome sequence survey shows that the pathogenic yeast Candida parapsilosis has a defective MTLa1 allele at its
Mary E Logue1, Simon Wong, Kenneth H Wolfe
1Department of Biochemistry, Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland.
Abstract:
Candida parapsilosis is responsible for ca. 15% of Candida infections and is of particular concern in neonates and surgical intensive care patients. The related species Candida albicans has recently been shown to possess a functional mating pathway. To analyze the analogous pathway in C. parapsilosis, we carried out a genome sequence survey of the type strain. We identified ca. 3,900 genes, with an average amino acid identity of 59% with C. albicans. Of these, 23 are predicted to be predominantly involved in mating. We identified a genomic locus homologous to the MTLa mating type locus of C. albicans, but the C. parapsilosis type strain has at least two internal stop codons in the MTLa1 open reading frame, and two predicted introns are not spliced. These stop codons were present in MTLa1 of all eight C. parapsilosis isolates tested. Furthermore, we found that all isolates of C. parapsilosis tested appear to contain only the MTLa idiomorph at the presumptive mating locus, unlike C. albicans and C. dubliniensis. MTLalpha sequences are present but at a different chromosomal location. It is therefore likely that all (or at least the majority) of C. parapsilosis isolates have a mating pathway that is either defective or substantially different from that of C. albicans.
Insights
The Candida parapsilosis mating pathway appears defective or significantly different from Candida albicans. Analysis revealed genetic mutations in the MTLa1 gene, suggesting impaired mating capabilities in most isolates.
Area of Science:
- Mycology
- Medical Microbiology
- Genomics
Background:
- Candida parapsilosis causes approximately 15% of Candida infections, posing risks to neonates and intensive care patients.
- The closely related species Candida albicans possesses a functional mating pathway, a process crucial for genetic exchange.
Purpose of the Study:
- To investigate the mating pathway in Candida parapsilosis by analyzing its genome.
- To compare the mating pathway genes and loci between C. parapsilosis and C. albicans.
Main Methods:
- Genome sequencing of the C. parapsilosis type strain.
- Identification and analysis of genes predicted to be involved in mating.
- Comparative analysis of mating type loci (MTLa and MTLalpha) with C. albicans.
Main Results:
- Identified approximately 3,900 genes in C. parapsilosis, with 59% amino acid identity to C. albicans.
- Discovered a locus homologous to the MTLa mating type locus, but with internal stop codons in MTLa1 and unspliced introns.
- Found that all tested C. parapsilosis isolates possess only the MTLa idiomorph, unlike C. albicans and C. dubliniensis.
Conclusions:
- The C. parapsilosis mating pathway is likely defective due to mutations in the MTLa1 gene.
- The genetic organization of mating type loci in C. parapsilosis differs significantly from C. albicans.
- These findings suggest that C. parapsilosis may have limited or no functional sexual reproduction via the known pathway.
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