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Generating Transposon Insertion Libraries in Gram-Negative Bacteria for High-Throughput Sequencing
Published on: July 7, 2020
Worldwide disseminated armA aminoglycoside resistance methylase gene is borne by composite transposon Tn1548
M Galimand1, S Sabtcheva, P Courvalin
1Unité des Agents Antibactériens, Institut Pasteur, 25, rue du Docteur Roux, 75724 Paris Cedex 15, France. galimand@pasteur.fr
Abstract:
The armA (aminoglycoside resistance methylase) gene, which confers resistance to 4,6-disubstituted deoxystreptamines and fortimicin, was initially found in Klebsiella pneumoniae BM4536 on IncL/M plasmid pIP1204 of ca. 90 kb which also encodes the extended-spectrum beta-lactamase CTX-M-3. Thirty-four enterobacteria from various countries that were likely to produce a CTX-M enzyme since they were more resistant to cefotaxime than to ceftazidime were studied. The armA gene was detected in 12 clinical isolates of Citrobacter freundii, Enterobacter cloacae, Escherichia coli, K. pneumoniae, Salmonella enterica, and Shigella flexneri, in which it was always associated with bla(CTX-M-3) on an IncL/M plasmid. Conjugation, analysis of DNA sequences, PCR mapping, and plasmid conduction experiments indicated that the armA gene was part of composite transposon Tn1548 together with genes ant3"9, sul1, and dfrXII, which are responsible for resistance to streptomycin-spectinomycin, sulfonamides, and trimethoprim, respectively. The 16.6-kb genetic element was flanked by two copies of IS6 and migrated by replicative transposition. This observation accounts for the presence of armA on self-transferable plasmids of various incompatibility groups and its worldwide dissemination. It thus appears that posttranscriptional modification of 16S rRNA confers high-level resistance to all the clinically available aminoglycosides except streptomycin in gram-negative human and animal pathogens.
Insights
The armA gene confers high-level aminoglycoside resistance in gram-negative pathogens by modifying 16S rRNA. This gene, often found with CTX-M-3 on plasmids, is disseminated globally via transposon Tn1548.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- The armA gene confers resistance to specific aminoglycosides.
- It was initially identified in Klebsiella pneumoniae on an IncL/M plasmid encoding CTX-M-3.
Purpose of the Study:
- To investigate the presence and genetic context of the armA gene in enterobacteria resistant to cefotaxime.
- To understand the dissemination mechanism of the armA gene.
Main Methods:
- Detection of the armA gene in clinical isolates.
- Plasmid analysis including conjugation, DNA sequencing, and PCR mapping.
- Transposon characterization.
Main Results:
- The armA gene was found in 12 clinical isolates of various enterobacteria, always associated with bla(CTX-M-3) on IncL/M plasmids.
- The armA gene is part of a composite transposon, Tn1548, which also includes genes for streptomycin-spectinomycin, sulfonamide, and trimethoprim resistance.
- Tn1548, a 16.6-kb element flanked by IS6 copies, undergoes replicative transposition.
Conclusions:
- The genetic element Tn1548 facilitates the spread of armA on transferable plasmids, contributing to its worldwide dissemination.
- Posttranscriptional modification of 16S rRNA by armA confers high-level resistance to most clinically used aminoglycosides in gram-negative pathogens.
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