Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

TO-GO: a Java-based Gene Ontology navigation environment.

Ungsik Yu1, Yoon Jeong Choi, Jung Kyoon Choi

  • 1National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea. ungsik@kribb.re.kr

Bioinformatics (Oxford, England)
|July 5, 2005
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Comprehensive characterization of the inflammatory ecosystems in immunotherapy-induced adverse events versus chronic inflammatory diseases.

Journal for immunotherapy of cancer·2026
Same author

Periodontal changes in patients with skeletal Class III malocclusion with and without prophylactic gingival grafting during presurgical orthodontic treatment.

American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics·2026
Same author

Improved image reconstruction in coherent diffraction imaging using self-seeded XFEL pulses.

Journal of synchrotron radiation·2026
Same author

A model for Crohn's disease post-ileal resection fibrosis development using human ileal enteroids and myofibroblasts.

Frontiers in physiology·2026
Same author

Predicting 10-Year Diabetes Risk Through Physiological Acceleration: A Longitudinal Deep Learning Ensemble Approach.

Diagnostics (Basel, Switzerland)·2026
Same author

Prediction of mandibular movement and center of rotation after total arch intrusion.

American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics·2026
Same journal

Probabilistic RNA designability via interpretable ensemble approximation and dynamic decomposition.

Bioinformatics (Oxford, England)·2026
Same journal

Quantifying domain-specific relevance of computational biology Wikipedia articles using TF-IDF and cosine similarity.

Bioinformatics (Oxford, England)·2026
Same journal

GATSBI: improving context-aware protein embeddings through biologically motivated data splits.

Bioinformatics (Oxford, England)·2026
Same journal

BiMba: using Vision Mamba to predict protein sites that bind other proteins.

Bioinformatics (Oxford, England)·2026
Same journal

ProMeta: a meta-learning framework for robust disease diagnosis and prediction from plasma proteomics.

Bioinformatics (Oxford, England)·2026
Same journal

Is a Win-Win possible? Achieving pareto-optimal privacy-utility balance in fine-tuned genome language model embeddings against embedding reconstruction attacks.

Bioinformatics (Oxford, England)·2026
See all related articles

TO-GO is a Java application for navigating the Gene Ontology (GO) database. This tool allows for interactive exploration of GO terms and gene product information, with offline capabilities and data analysis features.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Gene Ontology (GO) provides a structured vocabulary for gene product function.
  • Efficient navigation and analysis of GO data are crucial for biological research.
  • Existing tools may lack interactive features or offline capabilities.

Purpose of the Study:

  • To introduce TO-GO, a novel Gene Ontology navigation tool.
  • To provide an interactive and efficient platform for GO term and gene product data exploration.
  • To facilitate data analysis, including set operations for expression profile data.

Main Methods:

  • TO-GO is a Java application enabling interactive GO term tree navigation.
  • Supports offline access after initial data download.

Related Experiment Videos

  • Incorporates local annotation and querying by GO terms or gene products.
  • Provides results in tabular or sub-tree formats.
  • Implements set operations for advanced data analysis.

    • Main Results:

    • Interactive navigation of the GO term tree without network dependency.
    • Display of gene products associated with GO terms, including hierarchical counts.
    • Facilitation of data exchange through copy/paste functionality.
    • Utility of set operations for expression profile data analysis.

    Conclusions:

    • TO-GO offers an efficient and user-friendly interface for Gene Ontology exploration.
    • The tool enhances biological data analysis through interactive features and offline access.
    • TO-GO supports integration with local data and facilitates data sharing.