Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

wolfPAC: building a high-performance distributed computing network for phylogenetic analysis using 'obsolete'

Patrick A Reeves1, Philip H Friedman, Christopher M Richards

  • 1United States Department of Agriculture, Agricultural Research Service (USDA-ARS), National Center for Genetic Resources Preservation, Fort Collins, Colorado 80521, USA.

Applied Bioinformatics
|July 8, 2005
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

CD301b+ monocyte-derived dendritic cells mediate resistance to radiotherapy.

The Journal of experimental medicine·2025
Same author

MFSD6 is an entry receptor for enterovirus D68.

Nature·2025
Same author

MYADM binds human parechovirus 1 and is essential for viral entry.

Nature communications·2024
Same author

A pan-genome data structure induced by pooled sequencing facilitates variant mining in heterogeneous germplasm.

Molecular breeding : new strategies in plant improvement·2023
Same author

Autoantibodies are highly prevalent in non-SARS-CoV-2 respiratory infections and critical illness.

JCI insight·2023
Same author

LYSET/TMEM251- a novel key component of the mannose 6-phosphate pathway.

Autophagy·2023
Same journal

Statistically consistent identification of differentially expressed genes in DNA chip data over the whole expression range: relative variance method.

Applied bioinformatics·2006
Same journal

A nonparametric likelihood ratio test to identify differentially expressed genes from microarray data.

Applied bioinformatics·2006
Same journal

Simulation study of ratio calculation formulae of two-colour cDNA microarray data.

Applied bioinformatics·2006
Same journal

Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.

Applied bioinformatics·2006
Same journal

Comparisons of annotation predictions for affymetrix GeneChips.

Applied bioinformatics·2006
Same journal

Ontology annotation treebrowser : an interactive tool where the complementarity of medical subject headings and gene ontology improves the interpretation of gene lists.

Applied bioinformatics·2006
See all related articles

wolfPAC software enables distributed phylogenetic analysis on multiple Macintosh computers using PAUP*. This approach leverages inexpensive processors to foster resource sharing within the global phylogenetics community.

Area of Science:

  • Computational Biology
  • Bioinformatics
  • Evolutionary Biology

Background:

  • Phylogenetic analyses require significant computational resources.
  • Distributed computing offers a scalable solution for intensive tasks.
  • Existing methods may not fully utilize available networked hardware.

Purpose of the Study:

  • To introduce wolfPAC, a novel software package for distributed phylogenetic analysis.
  • To enable the use of multiple, geographically dispersed Macintosh computers for phylogenetic computations.
  • To promote resource sharing and collaboration in the phylogenetics research community.

Main Methods:

  • Utilizes AppleScript for inter-computer communication and task distribution.
  • Integrates with PAUP* (Phylogenetic Analysis Using Parsimony) for core phylogenetic analyses.

Related Experiment Videos

  • Designed for deployment on readily available and inexpensive Macintosh hardware.

    • Main Results:

    • Facilitates computationally intensive phylogenetic analyses through distributed processing.
    • Demonstrates the feasibility of using a network of Macintosh computers for complex biological research.
    • Provides a framework for efficient utilization of shared computational resources.

    Conclusions:

    • wolfPAC offers an accessible and cost-effective solution for advancing phylogenetic research.
    • The software encourages a collaborative approach to computational challenges in phylogenetics.
    • Distributed computing with wolfPAC can significantly accelerate the pace of evolutionary studies.