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Quantitative Polymerase Chain Reaction (qPCR)-Based Rapid Diagnosis of Helicobacter pylori Infection and Antibiotic Resistance
Published on: July 28, 2023
Invasive tests for Helicobacter pylori in children
1Division of Pediatric Gastroenterology and Nutrition, Department of Pediatrics, Stollery Children's Hospital, University of Alberta, Edmonton, Canada. huynh@ualberta.ca
Insights
Upper gastrointestinal (GI) endoscopy aids in diagnosing persistent abdominal pain in children. Mucosal biopsies are crucial for identifying Helicobacter pylori infection and guiding antibiotic treatment.
Area of Science:
- Pediatric Gastroenterology
- Microbiology
- Molecular Diagnostics
Background:
- Persistent, severe upper abdominal symptoms are a key reason for pediatric upper GI endoscopy.
- Upper GI endoscopy helps identify or exclude gastrointestinal pathology in children.
Purpose of the Study:
- To highlight the role of upper GI endoscopy with biopsies in diagnosing H. pylori infection in children.
- To detail the diagnostic applications of gastric biopsies for H. pylori, including rapid urease testing, histology, culture, and molecular genotyping.
Main Methods:
- Upper gastrointestinal endoscopy with mucosal biopsies.
- Rapid urease test, histological examination, and bacterial culture of biopsies.
- DNA extraction and genotyping for H. pylori detection, antibiotic resistance, and virulence factors.
Main Results:
- Upper GI endoscopy is essential for evaluating pediatric abdominal symptoms.
- Gastric biopsies are the gold standard for diagnosing H. pylori infection and its complications.
- Biopsies allow for comprehensive analysis, including antibiotic sensitivity and genetic profiling of H. pylori.
Conclusions:
- Upper GI endoscopy with biopsies is a critical tool in pediatric gastroenterology for H. pylori diagnosis.
- Comprehensive analysis of biopsies enables targeted treatment strategies for H. pylori infections in children.
- Molecular methods enhance the diagnostic capabilities for H. pylori, including resistance and virulence assessment.
Abstract:
One of the primary indications for upper gastrointestinal (GI) endoscopy in children is the presence of persistent and severe upper abdominal symptoms. Upper GI endoscopies are performed to allow the physician to confirm or rule out upper GI pathology. Additionally, upper GI endoscopies with mucosal biopsies are the gold standard for the diagnosis of Helicobacter pylori infection and its complications in children. The gastric biopsies can be used for the rapid urease test, histological examination and bacterial culture to determine antibiotic sensitivity. DNA extracted in these biopsies can also be subjected to genotyping using molecular methods to determine the presence of H. pylori infection, antibiotic resistance mutations and H. pylori virulence factors.
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