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Related Experiment Videos

GeneCruiser: a web service for the annotation of microarray data.

Ted Liefeld1, Michael Reich, Joshua Gould

  • 1Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA. liefeld@broad.mit.edu

Bioinformatics (Oxford, England)
|July 21, 2005
PubMed
Summary

GeneCruiser annotates genomic data by mapping microarray identifiers to gene identifiers. This web service links to resources like the UCSC Genome Browser for enhanced data analysis.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • GeneCruiser is a web service and application for annotating genomic data.
  • It is freely available at http://www.genecruiser.org.
  • GeneCruiser is also integrated into the GenePattern microarray analysis platform (http://www.genepattern.org).

Purpose of the Study:

  • To provide a web service for annotating genomic data.
  • To map microarray feature identifiers to gene identifiers from various databases.
  • To link annotated data to external web resources for further analysis.

Main Methods:

  • Utilizes a regularly updated database for mapping microarray probes to genomic databases.
  • Employs the Life Sciences Identifier standard for gene identification.

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  • Web service and web application access.

    • Main Results:

    • Successfully maps microarray feature identifiers to gene identifiers.
    • Provides links to external genomic databases and visualization tools.
    • Facilitates the annotation of genomic data.

    Conclusions:

    • GeneCruiser is a valuable tool for annotating genomic data.
    • It simplifies the process of linking microarray data to gene information.
    • Enhances genomic data analysis by integrating with external resources like the UCSC Genome Browser.