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Updated: Aug 16, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Promoter-hypermethylation is causing functional relevant downregulation of methylthioadenosine phosphorylase (MTAP)
Claus Hellerbrand1, Marcus Mühlbauer, Susanne Wallner
1Department of Internal Medicine I and Institute of Pathology, University of Regensburg, D-93042 Regensburg, Germany.
Abstract:
The methylthioadenosine phosphorylase (MTAP) gene is localized in the chromosomal region 9p21. Here, frequently homozygous deletions occur in several kinds of cancer associated with the loss of tumour suppressor genes as p16 and p15. The aim of this study was to analyse MTAP expression in hepatocellular carcinoma (HCC) and to get an insight into the regulation and functional role of MTAP in hepatocancerogenesis. Compared with primary human hepatocytes MTAP expression was markedly downregulated in three different HCC cell lines as determined by real-time PCR and western blotting. This was not due to genomic losses or mutations but to promoter-hypermethylation. Reduced MTAP-expression was confirmed in vivo in HCC compared with non-cancerous liver tissue on both mRNA and protein levels. To study the functional relevance of the downregulated MTAP expression in HCC, MTAP expression was re-induced in HCC cell lines by stable transfection. In these MTAP re-expressing cell clones the invasive potential was strongly reduced, whereas no effects on cell proliferation were observed in comparison with mock transfected cell clones. Furthermore, in MTAP re-expressing cells interferon (IFN)-alpha and IFN-gamma induced a significantly stronger inhibition of cell proliferation than in mock transfected cells. In conclusion, our results suggest a functional role of MTAP inactivation in HCC development and invasiveness. Furthermore, in the light of a recent report revealing an association between MTAP activity and IFN sensitivity, our findings may have clinical significance for therapeutic strategies.
Insights
Methylthioadenosine phosphorylase (MTAP) is downregulated in liver cancer due to promoter hypermethylation, not gene deletion. Restoring MTAP reduces cancer invasiveness and enhances sensitivity to interferon therapies.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- The methylthioadenosine phosphorylase (MTAP) gene, located at chromosomal region 9p21, is frequently deleted in various cancers, often alongside tumor suppressor genes like p16 and p15.
- Understanding MTAP's role in hepatocellular carcinoma (HCC) is crucial given its frequent genomic alterations in cancer.
Purpose of the Study:
- To investigate MTAP expression in HCC.
- To elucidate the regulatory mechanisms of MTAP in hepatocancerogenesis.
- To determine the functional significance of MTAP downregulation in HCC development and progression.
Main Methods:
- Real-time PCR and western blotting to assess MTAP expression in HCC cell lines and tissues.
- Analysis of MTAP promoter methylation.
- Stable transfection to re-express MTAP in HCC cell lines.
- Assessment of cell proliferation and invasion assays.
- Evaluation of interferon-induced cell proliferation inhibition.
Main Results:
- MTAP expression was significantly downregulated in HCC cell lines and tumor tissues compared to normal liver cells and tissues.
- Downregulation of MTAP was attributed to promoter hypermethylation, not genomic loss or mutations.
- Re-expression of MTAP in HCC cells reduced their invasive potential but did not affect proliferation.
- MTAP re-expressing cells showed enhanced sensitivity to interferon-alpha and interferon-gamma mediated growth inhibition.
Conclusions:
- MTAP inactivation plays a functional role in the development and invasiveness of HCC.
- The findings suggest MTAP's potential clinical significance in HCC therapeutic strategies, particularly concerning interferon sensitivity.
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