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Updated: Aug 16, 2026

Comparative Strategies for Ubiquitination Detection in Mammalian Cell Lysates Using SMAD2/SMURF2 as a Model
Published on: April 17, 2026
Regulation of epidermal growth factor receptor down-regulation by UBPY-mediated deubiquitination at endosomes
Emi Mizuno1, Takanobu Iura, Akiko Mukai
1Department of Biological Sciences, Tokyo Institute of Technology, Yokohama 226-8501, Japan.
Abstract:
Ligand-activated receptor tyrosine kinases undergo endocytosis and are transported via endosomes to lysosomes for degradation. This "receptor down-regulation" process is crucial to terminate the cell proliferation signals produced by activated receptors. During the process, ubiquitination of the receptors serves as a sorting signal for their trafficking from endosomes to lysosomes. Here, we describe the role of a deubiquitinating enzyme UBPY/USP8 in the down-regulation of epidermal growth factor (EGF) receptor (EGFR). Overexpression of UBPY reduced the ubiquitination level of EGFR and delayed its degradation in EGF-stimulated cells. Immunopurified UBPY deubiquitinated EGFR in vitro. In EGF-stimulated cells, UBPY underwent ubiquitination and bound to EGFR. Overexpression of Hrs or a dominant-negative mutant of SKD1, proteins that play roles in the endosomal sorting of ubiquitinated receptors, caused the accumulation of endogenous UBPY on exaggerated endosomes. A catalytically inactive UBPY mutant clearly localized on endosomes, where it overlapped with EGFR when cells were stimulated with EGF. Finally, depletion of endogenous UBPY by RNA interference resulted in elevated ubiquitination and accelerated degradation of EGF-activated EGFR. We conclude that UBPY negatively regulates the rate of EGFR down-regulation by deubiquitinating EGFR on endosomes.
Insights
The deubiquitinating enzyme UBPY/USP8 negatively regulates epidermal growth factor receptor (EGFR) down-regulation. UBPY/USP8 deubiquitinates EGFR on endosomes, delaying its degradation and signal termination.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Receptor tyrosine kinases, like the epidermal growth factor receptor (EGFR), are crucial for cell signaling.
- Ligand-activated receptor tyrosine kinases are internalized via endocytosis and trafficked to lysosomes for degradation to terminate signaling.
- Ubiquitination acts as a key signal for the lysosomal sorting of these receptors from endosomes.
Purpose of the Study:
- To investigate the role of the deubiquitinating enzyme UBPY/USP8 in the down-regulation of the epidermal growth factor receptor (EGFR).
- To elucidate the mechanism by which UBPY/USP8 influences EGFR ubiquitination, trafficking, and degradation.
Main Methods:
- Overexpression of UBPY/USP8 and its mutants in EGF-stimulated cells.
- In vitro deubiquitination assays using immunopurified UBPY/USP8.
- RNA interference (RNAi) to deplete endogenous UBPY/USP8.
- Immunoprecipitation and co-localization studies to assess protein interactions and localization on endosomes.
Main Results:
- Overexpression of UBPY/USP8 reduced EGFR ubiquitination and delayed its degradation.
- UBPY/USP8 directly deubiquitinated EGFR in vitro.
- UBPY/USP8 localized to endosomes and interacted with EGFR upon EGF stimulation.
- Depletion of UBPY/USP8 led to increased EGFR ubiquitination and accelerated degradation.
Conclusions:
- UBPY/USP8 functions as a negative regulator of EGFR down-regulation.
- The enzyme deubiquitinates EGFR on endosomes, thereby controlling its degradation rate and the termination of EGF signaling.
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