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Updated: Aug 16, 2026

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
Published on: July 19, 2019
Molecular dynamics simulations of matrix deposition. III. Site structure analysis for porphycene in argon and xenon
Alexander Kyrychenko1, Jacek Waluk
1Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44, Warsaw 01-224, Poland.
Abstract:
Porphycene (1) and porphyrin (2), two constitutional isomers, reveal completely different electronic spectral patterns in argon and xenon matrices. For the former the spectra recorded in the two solidified gases resemble each other, whereas for the latter they are completely different. This difference can be rationalized by molecular-dynamics simulations of the structure of the microenvironment carried out for the two chromophores embedded in argon and xenon hosts. For 1, the structure of the main substitutional site is the same for Ar and Xe and consists of a hexagonal cavity obtained by removing seven host atoms from the [111] crystallographic plane. An analogous structure is obtained for 2 in xenon. However, in argon the porphyrin chromophore environment is shared between several different sites, with the number of replaced host atoms ranging from seven to ten. These results demonstrate that a relatively minor structural alternation may lead to major changes in the spectral pattern of molecules embedded in rare-gas cryogenic matrices.
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