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Published on: October 11, 2022
Multispacer typing of Rickettsia prowazekii enabling epidemiological studies of epidemic typhus
Yong Zhu1, Pierre-Edouard Fournier, Hiroyuki Ogata
1Unité des Rickettsies, CNRS UMR 6020, IFR 48, Faculté de Médecine, Université de la Méditerranée, Marseille, France.
Abstract:
Currently, there is no tool for typing Rickettsia prowazekii, the causative agent of epidemic typhus, currently considered a potential bioterrorism agent, at the strain level. To test if the multispacer typing (MST) method could differentiate strains of R. prowazekii, we amplified and sequenced the 25 most variable intergenic spacers between the R. prowazekii and R. conorii genomes in five strains and 10 body louse amplicons of R. prowazekii from various geographic origins. Two intergenic spacers, i.e., rpmE/tRNA(fMet) and serS/virB4, were variable among tested R. prowazekii isolates and allowed identification of three and two genotypes, respectively. When the genotypes obtained from the two spacers were combined, we identified four different genotypes. MST demonstrated that several R. prowazekii strains circulated in human body lice during an outbreak of epidemic typhus in Burundi. This may help to discriminate between natural and intentional outbreaks. Our study supports the usefulness of MST as a versatile method for rickettsial strain genotyping.
Insights
Multispacer typing (MST) can now differentiate Rickettsia prowazekii strains, the cause of epidemic typhus. This method helps distinguish between natural and intentional outbreaks, aiding bioterrorism preparedness.
Area of Science:
- Microbiology
- Genetics
- Epidemiology
Background:
- Rickettsia prowazekii causes epidemic typhus and is a potential bioterrorism agent.
- A strain-level typing tool for R. prowazekii is currently unavailable.
- Differentiating outbreak origins is crucial for public health and security.
Purpose of the Study:
- To evaluate the efficacy of multispacer typing (MST) for differentiating R. prowazekii strains.
- To develop a molecular tool for R. prowazekii strain-level identification.
- To assess the genetic diversity of R. prowazekii in human body lice.
Main Methods:
- Amplification and sequencing of 25 variable intergenic spacers from R. prowazekii genomes.
- Analysis of five R. prowazekii strains and 10 body louse amplicons.
- Genotyping based on identified variable spacers (rpmE/tRNA(fMet) and serS/virB4).
Main Results:
- Two intergenic spacers (rpmE/tRNA(fMet) and serS/virB4) showed variability.
- Identification of three and two genotypes using individual spacers, respectively.
- Combined analysis of spacers revealed four distinct R. prowazekii genotypes.
- Evidence of multiple R. prowazekii strains circulating during an epidemic typhus outbreak in Burundi.
Conclusions:
- Multispacer typing (MST) is a versatile and effective method for R. prowazekii strain genotyping.
- MST can aid in distinguishing between natural and intentional R. prowazekii outbreaks.
- This genotyping tool enhances surveillance and bioterrorism preparedness for epidemic typhus.
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