Expression of base excision DNA repair genes as a biomarker of oxidative DNA damage

Christine L Powell1, James A Swenberg, Ivan Rusyn

  • 1Curriculum in Toxicology and Department of Environmental Sciences and Engineering, School of Public Health, University of North Carolina, Chapel Hill, NC 27599, USA.

Cancer Letters
|September 15, 2005
PubMed

Insights

Measuring changes in base excision repair (BER) gene expression offers a sensitive method to detect oxidative DNA damage in vivo. This approach overcomes limitations of current analytical techniques, providing a new biomarker for genomic instability and related diseases.

Area of Science:

  • Genomics
  • Molecular Biology
  • Biochemistry

Background:

  • Oxidative stress is a major cause of DNA damage, contributing to mutations and chronic diseases like cancer.
  • Existing methods for detecting oxidative DNA damage face technical challenges, including artifactual oxidation and DNA repair mechanisms.
  • The base excision repair (BER) pathway is crucial for removing oxidized bases, and its gene expression is induced by oxidative stress.

Purpose of the Study:

  • To evaluate the utility of measuring base excision repair (BER) gene expression as a sensitive in vivo biomarker for oxidative DNA damage.
  • To address the limitations of current analytical methods in detecting oxidative DNA damage.

Main Methods:

  • Monitoring changes in the expression levels of base excision repair (BER) genes.
  • Assessing the correlation between BER gene expression and oxidative DNA damage in vivo.

Main Results:

  • Changes in BER gene expression serve as a sensitive indicator of oxidative DNA damage.
  • This method provides a viable alternative to overcome the technical and biological obstacles of traditional detection techniques.

Conclusions:

  • Measuring BER gene expression is a promising in vivo biomarker for oxidative DNA damage.
  • This approach can aid in understanding the role of DNA damage in disease development and in evaluating therapeutic interventions.

Related Concept Videos

Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
Nucleotide Excision Repair01:08

Nucleotide Excision Repair

Overview
Long-patch Base Excision Repair01:02

Long-patch Base Excision Repair

Since the discovery of the two BER pathways, there has been a debate about how a cell chooses one pathway over the other and the factors determining this selection. Numerous in vitro experiments have pointed out multiple determinants for the sub-pathway selection. These are: