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Updated: Aug 15, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Opposing effects of DNA hypomethylation on intestinal and liver carcinogenesis
Yasuhiro Yamada1, Laurie Jackson-Grusby, Heinz Linhart
1Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology, Nine Cambridge Center, Cambridge, MA 02142, USA.
Abstract:
Genome-wide DNA hypomethylation and concomitant promoter-specific tumor suppressor gene hypermethylation are among the most common molecular alterations in human neoplasia. Consistent with the notion that both promoter hypermethylation and genome-wide hypomethylation are functionally important in tumorigenesis, genetic and/or pharmacologic reduction of DNA methylation levels results in suppression or promotion of tumor incidence, respectively, depending on the tumor cell type. For instance, DNA hypomethylation promotes tumors that rely predominantly on loss of heterozygosity (LOH) or chromosomal instability mechanisms, whereas loss of DNA methylation suppresses tumors that rely on epigenetic silencing. Mutational and epigenetic silencing events in Wnt pathway genes have been identified in human colon tumors. We used Apc(Min/+) mice to investigate the effect of hypomethylation on intestinal and liver tumor formation. Intestinal carcinogenesis in Apc(Min/+) mice occurs in two stages, with the formation of microadenomas leading to the development of macroscopic polyps. Using Dnmt1 hypomorphic alleles to reduce genomic methylation, we observed elevated incidence of microadenomas that were associated with LOH at Apc. In contrast, the incidence and growth of macroscopic intestinal tumors in the same animals was strongly suppressed. In contrast to the overall inhibition of intestinal tumorigenesis in hypomethylated Apc(Min/+) mice, hypomethylation caused development of multifocal liver tumors accompanied by Apc LOH. These findings support the notion of a dual role for DNA hypomethylation in suppressing later stages of intestinal tumorigenesis, but promoting early lesions in the colon and liver through an LOH mechanism.
Insights
DNA hypomethylation promotes early tumors via loss of heterozygosity (LOH) but suppresses later intestinal tumor growth. This epigenetic change has a dual role in cancer development, impacting both colon and liver lesions.
Area of Science:
- Epigenetics and Cancer Biology
- Genomic Instability and Tumorigenesis
Background:
- Genome-wide DNA hypomethylation and promoter hypermethylation are common in human cancers.
- DNA methylation levels influence tumor incidence, promoting or suppressing tumors based on cell type and mechanism (e.g., loss of heterozygosity vs. epigenetic silencing).
Purpose of the Study:
- To investigate the impact of reduced genomic methylation on intestinal and liver tumor formation using Apc(Min/+) mice.
- To elucidate the dual role of DNA hypomethylation in different stages and types of tumorigenesis.
Main Methods:
- Utilized Apc(Min/+) mice, a model for intestinal cancer.
- Employed Dnmt1 hypomorphic alleles to genetically reduce genomic DNA methylation levels.
- Analyzed tumor incidence, growth, and associated genetic events like loss of heterozygosity (LOH) at the Apc locus.
Main Results:
- Reduced DNA methylation led to an increased incidence of early intestinal microadenomas associated with Apc LOH.
- Conversely, macroscopic intestinal tumor development and growth were significantly suppressed in hypomethylated mice.
- Hypomethylation promoted multifocal liver tumors, also accompanied by Apc LOH.
Conclusions:
- DNA hypomethylation exhibits a dual role in tumorigenesis: promoting early-stage lesions (microadenomas, liver tumors) via LOH, while suppressing later-stage intestinal tumor progression.
- These findings highlight the context-dependent effects of epigenetic alterations on cancer development and progression.
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