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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
Aberrant splicing of cables gene, a CDK regulator, in human cancers
Hui Zhang1, Hai Ou Duan, Sandra D Kirley
1Departments of Pathology and Urology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.
Abstract:
Cables is a novel cell cycle regulatory protein that interacts with cdk2, cdk3, and cdk5. Cables inhibits cdk2 activity by enhancing cdk2 tyrosine 15 phosphorylation by Wee1, which consequently leads to inhibition of cell growth. Loss of Cables expression was found in many human cancers, especially colon and endometrial cancer. However, the role of the Cables gene in cancer development remains unclear. This study was undertaken to analyze transcripts of Cables gene in endometrial and colon cancers. The analysis of RT-PCR products of the Cables gene revealed shortened products in each sample along with the product of the expected size. Sequence analysis indicated that these shortened products represented eight intragenic deletions in Cables mRNA transcripts. Analysis of DNA from the same tumor sample failed to show genomic rearrangements corresponding to the transcripts containing deletions, suggesting that the deletions are the result of RNA splicing. Sequence analysis demonstrated that five of the deletions resulted from alternative splicing (splicing at the exon/intron boundary consensus sites), whereas the remaining three deletions resulted from aberrant splicing (splicing at sites not considered to be exon/intron boundary sites). All three aberrant splicing products were only detected in tumor tissues. Ectopic expression of one of the aberrant splicing products, which was detected in both endometrial and colon carcinomas, resulted in increased cell growth rate in human colon carcinoma HT-29 cells, suggesting a role as a dominant negative mutant.
Insights
The Cables gene, a cell cycle regulator, exhibits altered splicing in endometrial and colon cancers. Aberrant splicing products may promote cancer growth, suggesting a role in tumor development.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- Cables is a cell cycle regulatory protein interacting with cyclin-dependent kinases (CDKs).
- Loss of Cables expression is observed in human cancers, but its role in cancer development is unclear.
- This study investigates Cables gene transcripts in endometrial and colon cancers.
Purpose of the Study:
- To analyze Cables gene transcripts in endometrial and colon cancer samples.
- To identify and characterize alterations in Cables mRNA.
- To investigate the functional significance of aberrant Cables splicing in cancer.
Main Methods:
- Reverse transcription polymerase chain reaction (RT-PCR) to analyze Cables mRNA.
- DNA sequencing to identify deletion mutations.
- Cell culture experiments to assess the functional impact of aberrant splicing products.
Main Results:
- Shortened Cables mRNA transcripts with intragenic deletions were detected in tumor samples.
- Deletions resulted from alternative and aberrant RNA splicing, not genomic rearrangements.
- Aberrant splicing products were tumor-specific and one promoted cell growth in colon cancer cells.
Conclusions:
- Aberrant splicing of the Cables gene occurs in endometrial and colon cancers.
- Tumor-specific aberrant Cables splicing products may contribute to cancer progression.
- One aberrant splicing product functions as a dominant-negative mutant, promoting cell growth.
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