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Related Experiment Videos

A nutrigenomics database--integrated repository for publications and associated microarray data in nutrigenomics

Kenji Saito1, Soichi Arai, Hisanori Kato

  • 1Department of Applied Biological Chemistry, Graduate School of Agriculture and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, Japan.

The British Journal of Nutrition
|October 4, 2005
PubMed
Summary

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Researchers have developed a new web-based database for nutritional genomics (nutrigenomics) research. This integrated platform efficiently manages and shares publication and microarray expression data, supporting the growing field.

Area of Science:

  • Nutritional Genomics
  • Bioinformatics
  • Data Management

Background:

  • Microarray data in nutritional genomics is rapidly accumulating.
  • There is a critical need for efficient data infrastructure to support research workflows in nutrigenomics.
  • Existing data resources may be fragmented or difficult to access.

Purpose of the Study:

  • To establish a centralized, web-based, integrated database for nutritional genomics publications and microarray expression data.
  • To facilitate the effective utilization and sharing of nutrigenomics data among researchers.
  • To provide a user-friendly platform for accessing and managing research data.

Main Methods:

  • Development of a web-based integrated database system.
  • Incorporation of publication data and Minimum Information About a Microarray Experiment (MIAME)-compliant microarray expression data.

Related Experiment Videos

  • Linking to external databases such as PubMed and public microarray repositories.
  • Utilizing an open-source database system for accessibility and scalability.

    • Main Results:

    • A comprehensive database of nutritional genomics publications and associated microarray data has been established.
    • The database integrates links to relevant external resources, enhancing data accessibility.
    • The system is built on an open-source platform, ensuring free and open access.
    • The database is accessible via the World Wide Web at http://a-yo5.ch.a.u-tokyo.ac.jp/index.phtml.

    Conclusions:

    • The developed database provides an essential infrastructure for managing and sharing nutrigenomics data.
    • This resource will accelerate research by enabling efficient data utilization and collaboration.
    • The freely accessible, web-based platform supports the growing needs of the nutritional genomics field.