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Updated: Dec 29, 2025

An Optimized Single-Molecule Pull-Down Assay for Quantification of Protein Phosphorylation
Published on: June 6, 2022
Conformational changes accompany phosphorylation of the epidermal growth factor receptor C-terminal domain
1Department of Pharmacology, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA 52242-1109, USA.
Abstract:
The precise regulation of epidermal growth factor receptor (EGFR) signaling is crucial to its function in cellular growth control. Various studies have suggested that the C-terminal phosphorylation domain, itself a substrate for the EGFR kinase activity, exerts a regulatory influence upon it, although the molecular mechanism for this regulation is unknown. The fluorescence resonance energy transfer (FRET) technique was employed to examine how C-terminal domain conformational changes in the context of receptor activation and autophosphorylation might regulate EGFR enzymatic activity. A novel FRET reporter system was devised in which recombinant purified EGFR intracellular domain (ICD) proteins of varying C-terminal lengths were site-specifically labeled at their extreme C termini with blue fluorescent protein (BFP) and a fluorescent nucleotide analog, 2'(3')-O-(2,4,6-trinitrophenyl)-adenosine 5'-triphosphate (TNP-ATP), binding at their active sites. This novel BFP/TNP-ATP FRET pair demonstrated efficient energy transfer as evidenced by appreciable BFP-donor quenching by bound TNP-ATP. In particular, a marked reduction in energy transfer was observed for the full-length BFP-labeled EGFR-ICD protein upon phosphorylation, likely reflecting its movement away from the active site. The estimated distances from the BFP module to the TNP-ATP-occupied active site for the full-length and C-terminally truncated proteins also reveal the possible folding geometry of this domain with respect to the kinase core. The present studies demonstrate the first use of BFP/TNP-ATP as a FRET reporter system. Furthermore, the results described here provide biophysical evidence for phosphorylation-dependent conformational changes in the C-terminal phosphorylation domain and its likely interaction with the kinase core.
Insights
Epidermal growth factor receptor (EGFR) regulation involves its C-terminal domain. New FRET methods show phosphorylation causes conformational changes, impacting EGFR kinase activity and cellular growth control.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Signaling
Background:
- Epidermal growth factor receptor (EGFR) signaling is vital for cellular growth.
- The C-terminal phosphorylation domain of EGFR is known to regulate its activity, but the mechanism remains unclear.
Purpose of the Study:
- To investigate the molecular mechanism by which EGFR's C-terminal domain regulates its kinase activity.
- To explore the conformational changes in the EGFR C-terminal domain during activation and autophosphorylation using FRET.
Main Methods:
- Development of a novel FRET reporter system using blue fluorescent protein (BFP) and a fluorescent nucleotide analog (TNP-ATP).
- Site-specific labeling of purified EGFR intracellular domain (ICD) proteins with BFP and TNP-ATP.
- Measurement of FRET efficiency to assess conformational changes and distances within the EGFR ICD.
Main Results:
- The novel BFP/TNP-ATP FRET pair demonstrated efficient energy transfer.
- Phosphorylation of full-length EGFR-ICD led to a significant reduction in FRET, indicating C-terminal domain movement away from the active site.
- Calculated distances provided insights into the folding geometry of the C-terminal domain relative to the kinase core.
Conclusions:
- This study presents the first use of the BFP/TNP-ATP FRET system.
- Provides biophysical evidence for phosphorylation-dependent conformational changes in the EGFR C-terminal domain.
- Suggests a likely interaction between the C-terminal domain and the EGFR kinase core, influencing its activity.

