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Updated: Aug 15, 2026

Application of Stopped-flow Kinetics Methods to Investigate the Mechanism of Action of a DNA Repair Protein
Published on: March 31, 2010
PCNA-MutSalpha-mediated binding of MutLalpha to replicative DNA with mismatched bases to induce apoptosis in human
Masumi Hidaka1, Yasumitsu Takagi, Tomoko Y Takano
1Department of Molecular Biology, Biomolecular Engineering Research Institute, 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan. hidaka@beri.or.jp
Abstract:
Modified bases, such as O6-methylguanines, are produced in cells exposed to alkylating agents and cause apoptosis. In human cells treated with N-methyl-N-nitrosourea, we detected a protein complex composed of MutSalpha, MutLalpha and PCNA on damaged DNA by immunoprecipitation method using chromatin extracts, in which protein-protein interactions were stabilized by chemical crosslinking. Time course experiments revealed that MutSalpha, consisting of MSH2 and MSH6 proteins, and PCNA bind to DNA to form an initial complex, and MutLalpha, composed of MLH1 and PMS2, binds to the complex when the DNA is damaged. This sequential mode of binding was further confirmed by the findings that the association of PCNA-MutSalpha complex on chromatin was observed even in the cells that lack MLH1, whereas in the absence of MSH2 no association of MutLalpha with the chromatin was achieved. Moreover, reduction in the PCNA content by small-interfering RNA or inhibition of DNA replication by aphidicolin, an inhibitor of DNA polymerase, significantly reduced the levels of the PCNA-MutSalpha-MutLalpha complex and also suppressed an increase in the caspase-3 activity, a hallmark for the induction of apoptosis. These observations imply that the induction of apoptosis is coupled with the progression of DNA replication through the action of PCNA.
Insights
DNA repair proteins MutSalpha, MutLalpha, and PCNA form a complex on damaged DNA, triggering apoptosis. This process is linked to DNA replication, highlighting PCNA's role in cell death.
Area of Science:
- Molecular Biology
- Cell Biology
- DNA Repair Mechanisms
Background:
- Alkylating agents generate DNA damage, such as O6-methylguanines, which can lead to apoptosis.
- Understanding the molecular players involved in DNA damage response and apoptosis induction is crucial.
Purpose of the Study:
- To investigate the protein complex formation on DNA damaged by N-methyl-N-nitrosourea in human cells.
- To elucidate the sequential binding events of DNA repair proteins and their role in apoptosis.
Main Methods:
- Immunoprecipitation using chromatin extracts from treated human cells.
- Chemical crosslinking to stabilize protein-protein interactions.
- Time course experiments and analysis of protein complex formation in cells with genetic modifications or treated with inhibitors.
Main Results:
- A sequential binding of MutSalpha (MSH2/MSH6) and PCNA to damaged DNA, followed by MutLalpha (MLH1/PMS2) was observed.
- PCNA and MutSalpha form a complex independently of MLH1, but MutLalpha association requires MSH2.
- Reduced PCNA levels or inhibition of DNA replication suppressed the formation of the PCNA-MutSalpha-MutLalpha complex and apoptosis.
Conclusions:
- The formation of the MutSalpha-MutLalpha-PCNA complex on damaged DNA is a key event in apoptosis induction.
- Apoptosis induction is coupled with DNA replication progression, mediated by PCNA's involvement in the DNA repair complex.
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