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Updated: Aug 6, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Proteomic evidence for roles for nucleolin and poly[ADP-ribosyl] transferase in drug resistance
Zongming Fu1, Catherine Fenselau
1Department of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742, USA.
Abstract:
One-hundred twenty-four proteins have been identified in the soluble nuclear protein mixture from MCF-7 human breast cancer cells, of which more than 90% are classically categorized as nuclear proteins. Proteins were also studied from three drug resistant MDF-7 lines, selected previously from the same parent line by exposure to etoposide, to mitoxantrone, or to adriamycin in the presence of verapamil. Both quantitative gel comparisons and stable isotope labeling were used to identify a total of fourteen proteins whose abundances are altered by more than 2-fold in the three resistant lines. Several cytoskeleton proteins, cytokeratin 8, cytokeratin 19, septin 2, and alpha tropomyosin, are decreased in common across the three resistant cell lines. PARP-l (poly[ADP-ribosyl]transefrase or connexion) is found to be less abundant in all three resistant lines. Nucleolin is more abundant in lines resistant to etoposide and mitoxantrone, while the mitotic checkpoint protein BUB 3 is more abundant in the line resistant to adriamycin/verapamil.
Insights
This study identified 14 altered proteins in drug-resistant breast cancer cells, revealing decreased cytoskeleton proteins and PARP-1. Specific proteins like nucleolin and BUB3 showed altered abundance in distinct resistant lines.
Area of Science:
- Proteomics
- Cancer Biology
- Cellular Biochemistry
Background:
- MCF-7 human breast cancer cells are a common model for studying cancer.
- Drug resistance is a major challenge in cancer therapy, necessitating the identification of underlying molecular mechanisms.
- Understanding proteomic changes in resistant cells can reveal new therapeutic targets.
Purpose of the Study:
- To identify proteins with altered abundance in MCF-7 cells resistant to etoposide, mitoxantrone, or adriamycin/verapamil.
- To compare proteomic profiles across different drug resistance mechanisms.
- To uncover potential biomarkers or therapeutic targets associated with multidrug resistance.
Main Methods:
- Proteomic analysis of soluble nuclear proteins from parental and drug-resistant MCF-7 cell lines.
- Quantitative gel electrophoresis and stable isotope labeling techniques were employed.
- Identification of proteins with greater than 2-fold abundance changes.
Main Results:
- One hundred twenty-four nuclear proteins were identified in parental MCF-7 cells.
- Fourteen proteins showed altered abundance (>2-fold) in at least one resistant cell line.
- Common alterations included decreased abundance of cytoskeleton proteins (cytokeratin 8, cytokeratin 19, septin 2, alpha tropomyosin) and poly(ADP-ribosyl)transefrase (PARP-1).
- Nucleolin abundance increased in etoposide- and mitoxantrone-resistant lines.
- BUB3 (mitotic checkpoint protein) increased in the adriamycin/verapamil-resistant line.
Conclusions:
- Drug resistance in breast cancer cells is associated with significant proteomic alterations, particularly in cytoskeletal components and DNA repair proteins.
- Specific protein changes correlate with distinct drug resistance profiles.
- These findings may provide insights into mechanisms of multidrug resistance and suggest potential targets for overcoming it.
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