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Published on: August 25, 2023
Inactivation patterns of NF2 and DAL-1/4.1B (EPB41L3) in sporadic meningioma
Fabio Nunes1, Yiping Shen, Yo Niida
1Department of Neurology, Massachusetts General Hospital, Building 149, 13th Street, Charlestown, MA 02129, USA. fnunes@partners.org
Abstract:
The molecular basis of tumorigenesis and tumor progression in meningiomas is not fully understood. The neurofibromatosis 2 (NF2) locus is inactivated in 50-60% of sporadic meningiomas, but the genetic basis of sporadic meningiomas not inactivated at the NF2 locus remains unclear. Specifically, there is conflicting data regarding the role of the tumor suppressor gene DAL-1/4.1B. Using microsatellite markers, we studied 63 sporadic meningiomas to determine loss of heterozygosity (LOH) at the NF2 and DAL-1/4.1B loci. Array comparative genomic hybridization analysis of 52 of these tumors was performed to determine copy number changes on chromosomes 18 and 22. Forty-one of 62 informative tumors showed LOH at the NF2 locus (66%) while only 12 of 62 informative tumors (19%) showed LOH of DAL-1/4.1B. Eleven of 12 (92%) tumors with DAL-1/4.1B LOH also had NF2 LOH. Monosomy or large deletions of chromosomes 18 and 22 were the main mechanism for LOH in these tumors. These studies implicate the DAL-1/4.1B locus in sporadic meningiomas less commonly than reported previously, and suggest that it is a progression rather than an initiation locus. Furthermore, we found the majority of meningiomas developed monosomy rather than isodisomy at the NF2 and DAL-1/4.1B loci as the mechanism for LOH.
Insights
The DAL-1/4.1B gene is less frequently involved in sporadic meningiomas than previously thought. Loss of heterozygosity at the DAL-1/4.1B locus suggests a role in tumor progression, not initiation.
Area of Science:
- Neuro-oncology
- Cancer Genetics
- Molecular Biology
Background:
- The molecular mechanisms driving meningioma development and progression are not fully elucidated.
- While the neurofibromatosis 2 (NF2) gene is frequently inactivated in meningiomas, the genetic alterations in tumors without NF2 inactivation remain unclear.
- Conflicting data exists regarding the role of the DAL-1/4.1B tumor suppressor gene in meningioma pathogenesis.
Purpose of the Study:
- To investigate the frequency and mechanisms of loss of heterozygosity (LOH) at the NF2 and DAL-1/4.1B loci in sporadic meningiomas.
- To determine the role of the DAL-1/4.1B locus in meningioma initiation versus progression.
- To identify copy number alterations in sporadic meningiomas using array comparative genomic hybridization.
Main Methods:
- Microsatellite marker analysis of 63 sporadic meningiomas to assess LOH at NF2 and DAL-1/4.1B loci.
- Array comparative genomic hybridization (aCGH) analysis of 52 tumors to detect copy number changes on chromosomes 18 and 22.
- Correlation of LOH status with tumor characteristics and copy number alterations.
Main Results:
- LOH at the NF2 locus was observed in 66% of informative tumors, while LOH at the DAL-1/4.1B locus occurred in 19%.
- The majority (92%) of tumors with DAL-1/4.1B LOH also exhibited NF2 LOH.
- Monosomy or large deletions of chromosomes 18 and 22 were the primary mechanisms underlying LOH at these loci.
- Most meningiomas showed monosomy rather than isodisomy at the NF2 and DAL-1/4.1B loci.
Conclusions:
- The DAL-1/4.1B locus is implicated less frequently in sporadic meningiomas than previously reported.
- Evidence suggests DAL-1/4.1B acts as a tumor progression locus rather than an initiation locus.
- Monosomy is the predominant mechanism for LOH at the NF2 and DAL-1/4.1B loci in sporadic meningiomas.
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