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Updated: Jul 12, 2026

Electrophoretic Mobility Shift Assay (EMSA) for the Study of RNA-Protein Interactions: The IRE/IRP Example
Published on: December 4, 2014
Takeover of host ribosomes by divergent IRES elements
P Sarnow1, R C Cevallos, E Jan
1Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. psarnow@stanford.edu
Viruses compete with host cells for ribosomes. Some viruses use internal ribosome entry sites (IRESs) to recruit ribosomes, enabling protein synthesis with fewer initiation factors and aiding viral replication during immune responses.
Area of Science:
- Molecular Biology
- Virology
- Biochemistry
Background:
- Viruses must compete with host cells for essential protein synthesis machinery, including ribosomes and eukaryotic initiation factors.
- Viral mRNAs often face competition for these resources early in infection, potentially limiting viral replication.
Purpose of the Study:
- To explore how viruses utilize internal ribosome entry sites (IRESs) to overcome host cell competition for translation resources.
- To understand the mechanism of IRES-mediated translation initiation and its role in viral gene amplification.
Main Methods:
- The study discusses the mechanisms of divergent IRES elements.
- Analysis of how IRESs recruit ribosomes and initiate protein synthesis.
- Examination of the role of minimal eukaryotic translation initiation factors in IRES function.
Main Results:
- Divergent IRES elements can efficiently recruit ribosomes and initiate translation using a limited set of eukaryotic translation initiation factors.
- This IRES-mediated translation strategy aids viral gene amplification.
Conclusions:
- Internal ribosome entry sites (IRESs) represent a sophisticated viral adaptation to circumvent host cell translational control.
- IRES-driven translation is crucial for efficient viral replication, particularly during the early stages of innate immune responses.
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