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Purification of H3 and H4 Histone Proteins and the Quantification of Acetylated Histone Marks in Cells and Brain Tissue
Published on: November 30, 2018
Thyroid hormone-regulated target genes have distinct patterns of coactivator recruitment and histone acetylation
Ying Liu1, Xianmin Xia, Joseph D Fondell
1Endocrinology Division, Department of Medicine, Johns Hopkins Bayview Medical Center, 4940 Eastern Avenue, Room B114, Baltimore, Maryland 21224, USA.
Abstract:
Thyroid hormone receptors (TRs) are ligand-regulated transcription factors that bind to thyroid hormone response elements of target genes. Upon ligand binding, they recruit coactivator complexes that increase histone acetylation and recruit RNA polymerase II (Pol II) to activate transcription. Recent studies suggest that nuclear receptors and coactivators may have temporal recruitment patterns on hormone response elements, yet little is known about the nature of the patterns at multiple endogenous target genes. We thus performed chromatin immunoprecipitation assays to investigate coactivator recruitment and histone acetylation patterns on the thyroid hormone response elements of four endogenous target genes (GH, sarcoplasmic endoplasmic reticulum calcium-adenosine triphosphatase, phosphoenolpyruvate carboxykinase, and cholesterol 7alpha-hydroxylase) in a rat pituitary cell line that expresses TRs. We found that TRbeta, several associated coactivators (steroid receptor coactivator-1, glucocorticoid receptor interacting protein-1, and TR-associated protein 220), and RNA Pol II were rapidly recruited to thyroid hormone response elements as early as 15 min after T3 addition. When the four target genes were compared, we observed differences in the types and temporal patterns of recruited coactivators and histone acetylation. Interestingly, the temporal pattern of RNA Pol II was similar for three genes studied. Our findings suggest that thyroid hormone-regulated target genes may have distinct patterns of coactivator recruitment and histone acetylation that may enable highly specific regulation.
Insights
Thyroid hormone receptors (TRs) rapidly recruit coactivators and RNA polymerase II to target genes. Distinct temporal patterns of coactivator recruitment and histone acetylation suggest specific gene regulation by thyroid hormone.
Area of Science:
- Molecular Endocrinology
- Gene Regulation
- Chromatin Biology
Background:
- Thyroid hormone receptors (TRs) are transcription factors activated by thyroid hormone.
- TRs recruit coactivators to increase histone acetylation and activate gene transcription.
- The temporal dynamics of coactivator recruitment at endogenous TR target genes are not well understood.
Purpose of the Study:
- To investigate the temporal patterns of coactivator recruitment and histone acetylation at four endogenous TR target genes.
- To determine if these patterns differ across target genes.
Main Methods:
- Chromatin immunoprecipitation (ChIP) assays were performed in a rat pituitary cell line.
- Coactivator recruitment and histone acetylation were analyzed at the thyroid hormone response elements (TREs) of four target genes (GH, SERCA, PEPCK, CH)।
- Analysis was conducted at various time points after addition of thyroid hormone (T3).
Main Results:
- TRbeta, coactivators (SRC-1, GRIP-1, TRAP220), and RNA polymerase II (Pol II) were rapidly recruited to TREs within 15 minutes of T3 addition.
- Significant differences were observed in the types and temporal patterns of coactivator recruitment and histone acetylation across the four target genes.
- The temporal recruitment pattern of Pol II was similar for three of the four target genes studied.
Conclusions:
- Thyroid hormone-regulated target genes exhibit distinct patterns of coactivator recruitment and histone acetylation.
- These distinct patterns suggest a mechanism for highly specific gene regulation by thyroid hormone.
- The conserved temporal recruitment of Pol II implies a common downstream transcriptional initiation step.
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