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Updated: Aug 15, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
A mechanism of COOH-terminal binding protein-mediated repression
Alison R Meloni1, Chun-Hsiang Lai, Tso-Pang Yao
1Department of Molecular Genetics and Microbiology, Duke University Medical Center, Box 3054, Durham, North Carolina 27710, USA.
Abstract:
The E2F4 and E2F5 proteins specifically associate with the Rb-related p130 protein in quiescent cells to repress transcription of various genes encoding proteins important for cell growth. A series of reports has provided evidence that Rb-mediated repression involves both histone deacetylase (HDAC)-dependent and HDAC-independent events. Our previous results suggest that one such mechanism for Rb-mediated repression, independent of recruitment of HDAC, involves the recruitment of the COOH-terminal binding protein (CtBP) corepressor, a protein now recognized to play a widespread role in transcriptional repression. We now find that CtBP can interact with the histone acetyltransferase, cyclic AMP--responsive element--binding protein (CREB) binding protein, and inhibit its ability to acetylate histone. This inhibition is dependent on a NH2-terminal region of CtBP that is also required for transcription repression. These results thus suggest two complementary mechanisms for E2F/p130-mediated repression that have in common the control of histone acetylation at target promoters.
Insights
The E2F4/p130 complex represses gene transcription via two pathways. One pathway involves the COOH-terminal binding protein (CtBP) corepressor inhibiting histone acetylation, controlling gene expression in quiescent cells.
Area of Science:
- Molecular Biology
- Cell Biology
- Epigenetics
Background:
- E2F4 and E2F5 proteins associate with p130 in quiescent cells.
- This complex represses transcription of cell growth-related genes.
- Rb-mediated repression involves both HDAC-dependent and HDAC-independent mechanisms.
Purpose of the Study:
- Investigate HDAC-independent repression mechanisms.
- Elucidate the role of COOH-terminal binding protein (CtBP) in E2F/p130-mediated repression.
- Determine how CtBP influences histone acetylation.
Main Methods:
- Co-immunoprecipitation assays to study protein interactions.
- In vitro assays to assess histone acetyltransferase activity.
- Analysis of CtBP functional domains required for repression.
Main Results:
- CtBP interacts with p130, mediating HDAC-independent repression.
- CtBP inhibits the histone acetyltransferase activity of CREB-binding protein.
- A specific NH2-terminal region of CtBP is crucial for both repression and inhibition of acetylation.
Conclusions:
- E2F/p130-mediated repression involves two complementary mechanisms.
- Both mechanisms converge on the control of histone acetylation at target gene promoters.
- CtBP plays a key role in regulating histone acetylation during transcriptional repression.
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