Lost in translation: the influence of ribosomes on bacterial mRNA decay

Atilio Deana1, Joel G Belasco

  • 1Skirball Institute of Biomolecular Medicine and Department of Microbiology, New York University School of Medicine, New York, New York 10016, USA.

Genes & Development
|November 3, 2005
PubMed

Insights

Bacterial messenger RNA (mRNA) stability is controlled by ribosomes during translation. Ribosomes protect mRNA from degradation but can also trigger its decay, ensuring only functional proteins are produced.

Area of Science:

  • Molecular Biology
  • Bacterial Genetics
  • Gene Expression Regulation

Background:

  • Bacterial mRNA lifetimes are crucial for regulating gene expression.
  • Ribosomes play a complex role in mRNA stability, acting as both protectors and triggers of decay.
  • Understanding mRNA decay pathways is essential for bacterial physiology.

Purpose of the Study:

  • To investigate the intricate relationship between translation and bacterial mRNA decay.
  • To elucidate how ribosomal activity influences mRNA susceptibility to nucleases.
  • To highlight the role of translation in bacterial mRNA quality control.

Main Methods:

  • Analysis of mRNA decay rates under various translational conditions.
  • Investigating the impact of ribosome binding, elongation, and termination on mRNA stability.
  • Studying the signaling mechanisms by which ribosomes can induce mRNA destabilization.

Main Results:

  • Ribosome association significantly impacts bacterial mRNA lifetimes.
  • Translational events, including initiation, elongation, and termination, modulate mRNA decay.
  • Ribosomes can either protect mRNA from degradation or actively promote its destabilization.

Conclusions:

  • Translation is a key determinant of bacterial mRNA stability.
  • Ribosome-mediated mRNA decay acts as a critical quality control mechanism.
  • This process prevents the production of potentially toxic aberrant proteins in bacteria.

Related Concept Videos

Types of RNA01:23

Types of RNA

Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Types of RNA01:20

Types of RNA

Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
Translational Regulation01:29

Translational Regulation

Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
Coordination of Gene Expression Processes in Bacteria01:29

Coordination of Gene Expression Processes in Bacteria

The DNA replication, transcription, and translation processes are intricately coupled in bacteria, allowing efficient gene expression and rapid protein synthesis. While this physical and functional coordination is advantageous, it introduces challenges that bacteria overcome through specific regulatory mechanisms.Coupling of Replication, Transcription, and TranslationThe coupling of replication, transcription, and translation is a hallmark of bacterial gene expression. As the replisome unwinds...
Termination of Translation01:44

Termination of Translation

The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...