Related Experiment Video
Updated: Jul 25, 2026

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
RASSF2, a potential tumour suppressor, is silenced by CpG island hypermethylation in gastric cancer
1Department of Pathology, Yamagata University School of Medicine, 2-2-2 Iida-nishi, Yamagata 990-9585, Japan.
Abstract:
RASSF2, a member of the RASSF1 family, has recently been identified as a potential tumour suppressor. We examined methylation status in multiple regions which included the CpG island and spanned the transcription start site of RASSF2 in 10 gastric cancer cell lines, as well as 78 primary gastric cancers and corresponding non-neoplastic gastric epithelia. Hypermethylation of RASSF2 in at least one of the regions examined was detected in seven (70%) of the 10 cell lines; two (20%) exhibited hypermethylation in all the regions examined including the transcription start site and lost expression of RASSF2 mRNA, which could, however, be restored by 5-aza-2' deoxycytidine treatment, while the other five (50%) cell lines exhibited hypermethylation at the 5'- and/or 3'- edge, with four of them expressing RASSF2 mRNA. In primary gastric cancers and corresponding non-neoplastic gastric epithelia, frequencies of RASSF2 methylation ranged from 29% (23 out of 78) to 79% (62 out of 78) and 3% (two out of 78) to 60% (47 out of 78), respectively, at different CpG sites examined. Methylation was frequently observed at the 5'- and 3'- edges, and became less frequent near the transcription start site in both the primary gastric cancers and corresponding non-neoplastic gastric epithelia. Hypermethylation near the transcription start site was mostly cancer-specific. We thus showed that RASSF2 is silenced by hypermethylation near the transcription start site in gastric cancer. Hypermethylation was found initially to occur at the 5'- and 3'- furthest regions of the CpG island in non-neoplastic gastric epithelia, to gradually spreads near the transcription start site to shut down RASSF2 expression, and ultimately to constitute a field-defect placing tissue increased risk for development of gastric cancer.
Insights
The RASSF2 gene, a potential tumor suppressor, is frequently silenced by hypermethylation in gastric cancer. This epigenetic silencing progresses from the edges of its CpG island towards the transcription start site, increasing cancer risk.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- RASSF2, a member of the RASSF1 family, is identified as a potential tumor suppressor gene.
- Aberrant DNA methylation is a key mechanism in cancer development.
Purpose of the Study:
- To investigate the methylation status of RASSF2 in gastric cancer.
- To determine the correlation between RASSF2 methylation and its expression in gastric cancer cell lines and primary tumors.
Main Methods:
- Analysis of RASSF2 methylation across its CpG island, including the transcription start site (TSS), in 10 gastric cancer cell lines.
- Examination of RASSF2 methylation and mRNA expression in 78 primary gastric cancers and adjacent non-neoplastic tissues.
- Treatment of cell lines with 5-aza-2'-deoxycytidine to assess the reversibility of RASSF2 silencing.
Main Results:
- RASSF2 hypermethylation was detected in 70% of gastric cancer cell lines, with 20% showing methylation at the TSS and loss of mRNA expression.
- Methylation frequencies in primary gastric cancers ranged from 29% to 79%, and in non-neoplastic tissues from 3% to 60% across different CpG sites.
- Hypermethylation near the RASSF2 TSS was predominantly cancer-specific, suggesting a role in tumorigenesis, while methylation at the 5' and 3' edges occurred in both cancerous and non-neoplastic tissues.
Conclusions:
- RASSF2 is silenced by cancer-specific hypermethylation near its transcription start site in gastric cancer.
- Epigenetic silencing of RASSF2 appears to be a progressive process, initiating at the CpG island edges and spreading towards the TSS, potentially leading to a field defect and increased gastric cancer risk.
Related Concept Videos
Epigenetic Regulation
Experimental RNAi
Abnormal Proliferation
Loss of Tumor Suppressor Gene Functions
When the tumor suppressor genes develop mutations or are lost, cells start growing out of control, leading to cancer. However, a single functional copy of the tumor suppressor gene is enough for the cells to maintain their normal functions and cell...
The Retinoblastoma Gene
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
Epigenetic Regulation
X-chromosome...

