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Published on: March 28, 2017
Identification of CYP2D6 impaired functional alleles in Mexican Americans
Huai-Rong Luo1, Andrea Gaedigk, Vasileios Aloumanis
1Department of Pharmacology, Toxicology and Therapeutics, University of Kansas Medical Center, Mail Stop 1018, Breidenthal Building, 3901 Rainbow Blvd., Kansas City, KS 66160-7417, USA.
Objectives:
To extend the genotyping analysis of the CYP2D6 gene and further explain variability of CYP2D6 activity in Mexican Americans by genetic factors.
Methods:
CYP2D6 gene sequence variations associated with *6, *7, *8, *9, *11, *14, *29, *41, *45, and *46 alleles as well as the 2988G>A SNP were examined in 264 Mexican Americans; 236 had previously been phenotyped with dextromethorphan. All subjects were previously genotyped for CYP2D6*2, *3, *4, *5, *10, *17, and the presence of a gene duplication. Associations between genotype and CYP2D6 activity were determined.
Results:
Mexican Americans revealed a high frequency of functional alleles (CYP2D6*1 and *2; 73.1%), followed by CYP2D6*4 (non-functional, 10.0%) and the reduced-function allele *41 (9.5%). The frequencies of CYP2D6*5, *6, *9, *10, duplication, and 2988A were 1.7%, 0.4%, 1.1%, 2.8%, 0.8%, and 5.7%, respectively. CYP2D6*3, *17, and *29 were found only in one individual (CYP2D6*2/*3, *1/*17, and *4/*29), while CYP2D6*7, *8, *11, *14, *45, and *46 were absent in this study population. Decreased CYP2D6 activity was more accurately predicted by the presence *41[-1584C] compared to *41[2988A]. One genotype/phenotype discordant subject was resolved by the presence of a CYP2D6*6 allele (*4/*6), while two other cases remained discordant (*41/*41 and *1/*1).
Conclusions:
The CYP2D6*4, *5, and *6 null alleles along the reduced function alleles *9, *10, and *41 are the major cause for diminished dextromethorphan oxidative capacity in Mexican Americans. These findings may have implications for the safety and efficacy of CYP2D6 substrates taken by Mexican Americans.
Insights
Genetic factors significantly influence CYP2D6 activity in Mexican Americans. Specific CYP2D6 alleles, like *4, *5, *6, *9, *10, and *41, are major contributors to reduced drug metabolism, impacting treatment efficacy and safety.
Area of Science:
- Pharmacogenomics
- Human Genetics
- Drug Metabolism
Background:
- Cytochrome P450 2D6 (CYP2D6) is crucial for metabolizing numerous drugs.
- Understanding genetic variations in CYP2D6 is vital for personalized medicine, especially in diverse populations like Mexican Americans.
- Previous studies have not fully elucidated the genetic basis of CYP2D6 activity variability in this demographic.
Purpose of the Study:
- To conduct an extended genotyping analysis of the CYP2D6 gene in Mexican Americans.
- To identify specific genetic factors contributing to the variability of CYP2D6 enzyme activity within this population.
Main Methods:
- Genotyping was performed for multiple CYP2D6 alleles (*6, *7, *8, *9, *11, *14, *29, *41, *45, *46) and the 2988G>A SNP in 264 Mexican Americans.
- Phenotyping data from 236 subjects using dextromethorphan was utilized.
- Associations between identified genotypes and measured CYP2D6 activity were statistically analyzed.
Main Results:
- High frequencies of functional CYP2D6*1 and *2 alleles (73.1%) were observed.
- Significant frequencies of non-functional CYP2D6*4 (10.0%) and reduced-function CYP2D6*41 (9.5%) alleles were detected.
- Alleles CYP2D6*5, *6, *9, *10, and the 2988A variant were present at lower frequencies, while several alleles were absent or rare.
Conclusions:
- Null alleles (CYP2D6*4, *5, *6) and reduced-function alleles (CYP2D6*9, *10, *41) are primary drivers of diminished dextromethorphan metabolism in Mexican Americans.
- These genetic variations have significant implications for the safety and efficacy of drugs metabolized by CYP2D6 in this population.
- Further research into CYP2D6 pharmacogenomics in diverse ethnic groups is warranted.
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