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Updated: May 12, 2026

Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
mTOR and S6K1 mediate assembly of the translation preinitiation complex through dynamic protein interchange and
Marina K Holz1, Bryan A Ballif, Steven P Gygi
1Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Abstract:
In response to nutrients, energy sufficiency, hormones, and mitogenic agents, S6K1 phosphorylates several targets linked to translation. However, the molecular mechanisms whereby S6K1 is activated, encounters substrate, and contributes to translation initiation are poorly understood. We show that mTOR and S6K1 maneuver on and off the eukaryotic initiation factor 3 (eIF3) translation initiation complex in a signal-dependent, choreographed fashion. When inactive, S6K1 associates with the eIF3 complex, while the S6K1 activator mTOR/raptor does not. Cell stimulation promotes mTOR/raptor binding to the eIF3 complex and phosphorylation of S6K1 at its hydrophobic motif. Phosphorylation results in S6K1 dissociation, activation, and subsequent phosphorylation of its translational targets, including eIF4B, which is then recruited into the complex in a phosphorylation-dependent manner. Thus, the eIF3 preinitiation complex acts as a scaffold to coordinate a dynamic sequence of events in response to stimuli that promote efficient protein synthesis.
Insights
The study reveals how the eukaryotic initiation factor 3 (eIF3) complex acts as a scaffold, orchestrating the dynamic activation of S6 kinase 1 (S6K1) to control protein synthesis in response to cellular signals.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Ribosomal protein S6 kinase 1 (S6K1) is a key regulator of translation, phosphorylating targets involved in protein synthesis.
- The precise molecular mechanisms governing S6K1 activation, substrate interaction, and its role in translation initiation remain incompletely understood.
Purpose of the Study:
- To elucidate the dynamic interplay between mTOR, S6K1, and the eukaryotic initiation factor 3 (eIF3) complex during signal-dependent translation initiation.
- To investigate how cellular stimuli modulate the association and activation of S6K1 within the eIF3 complex.
Main Methods:
- Utilized biochemical assays to track the association and dissociation of mTOR, raptor, and S6K1 with the eIF3 complex.
- Investigated the phosphorylation status of S6K1 at its hydrophobic motif upon cellular stimulation.
- Examined the phosphorylation-dependent recruitment of translation factors like eIF4B to the eIF3 complex.
Main Results:
- Demonstrated that inactive S6K1 binds to the eIF3 complex, while its activator, mTOR/raptor, does not.
- Showed that cell stimulation leads to mTOR/raptor binding to eIF3, promoting S6K1 phosphorylation and subsequent dissociation and activation.
- Confirmed that activated S6K1 phosphorylates downstream targets such as eIF4B, facilitating its recruitment to the translation initiation complex.
Conclusions:
- The eIF3 complex serves as a crucial scaffold, coordinating a dynamic sequence of molecular events for signal-responsive translation initiation.
- This mechanism ensures efficient protein synthesis by precisely regulating S6K1 activation and substrate phosphorylation in response to cellular cues.
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