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Updated: Jun 23, 2026

Monitoring the Assembly of a Secreted Bacterial Virulence Factor Using Site-specific Crosslinking
Published on: December 17, 2013
Mechanisms of assembly and cellular interactions for the bacterial genotoxin CDT
Dragana Nesic1, C Erec Stebbins
1Laboratory of Structural Microbiology, The Rockefeller University, New York, New York, USA.
Abstract:
Many bacterial pathogens that cause different illnesses employ the cytolethal distending toxin (CDT) to induce host cell DNA damage, leading to cell cycle arrest or apoptosis. CDT is a tripartite holotoxin that consists of a DNase I family nuclease (CdtB) bound to two ricin-like lectin domains (CdtA and CdtC). Through the use of structure-based mutagenesis, biochemical and cellular toxicity assays, we have examined several key structural elements of the CdtA and CdtC subunits for their importance to toxin assembly, cell surface binding, and activity. CdtA and CdtC possess N- and C-terminal nonglobular polypeptides that extensively interact with each other and CdtB, and we have determined the contribution of each to toxin stability and activity. We have also functionally characterized two key binding elements of the holotoxin revealed from its crystal structure. One is an aromatic cluster in CdtA, and the other is a long and deep groove that is formed at the interface of CdtA and CdtC. We demonstrate that mutations of the aromatic patch or groove residues impair toxin binding to HeLa cells and that cell surface binding is tightly correlated with intoxication of cultured cells. These results establish several structure-based hypotheses for the assembly and function of this toxin family.
Insights
Cytolethal distending toxin (CDT) uses CdtA and CdtC subunits to bind host cells, causing DNA damage. Structural analysis reveals key binding elements crucial for CDT
Area of Science:
- Bacterial pathogenesis
- Molecular toxicology
- Structural biology
Background:
- Bacterial pathogens utilize cytolethal distending toxin (CDT) to induce host cell DNA damage, cell cycle arrest, and apoptosis.
- CDT is a tripartite holotoxin comprising a DNase I family nuclease (CdtB) and two ricin-like lectin domains (CdtA and CdtC).
Purpose of the Study:
- To investigate the structural elements of CdtA and CdtC subunits essential for CDT holotoxin assembly, cell surface binding, and toxic activity.
- To elucidate the functional roles of specific binding sites within the CDT holotoxin.
Main Methods:
- Structure-based mutagenesis was employed to modify key residues in CdtA and CdtC.
- Biochemical assays were used to assess toxin assembly and stability.
- Cellular toxicity assays and cell surface binding assays (e.g., on HeLa cells) were performed to evaluate functional consequences.
Main Results:
- N- and C-terminal nonglobular polypeptides of CdtA and CdtC significantly contribute to holotoxin stability and activity through interactions with CdtB.
- An aromatic cluster in CdtA and a groove at the CdtA-CdtC interface are identified as critical binding elements.
- Mutations in these binding elements impair HeLa cell binding and subsequent cellular intoxication, demonstrating a strong correlation between binding and activity.
Conclusions:
- The study establishes structure-based hypotheses for the assembly and function of the CDT toxin family.
- Specific structural features of CdtA and CdtC are critical for CDT-mediated host cell DNA damage and pathogenesis.
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