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Updated: Aug 14, 2026

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
Published on: June 11, 2015
Structure of a group A streptococcal phage-encoded virulence factor reveals a catalytically active triple-stranded
Nicola L Smith1, Edward J Taylor, Anna-Marie Lindsay
1Chemical Biology Research Group, School of Applied Sciences, Northumbria University, Newcastle upon Tyne NE1 8ST, United Kingdom.
Abstract:
Streptococcus pyogenes (group A Streptococcus) causes severe invasive infections including scarlet fever, pharyngitis (streptococcal sore throat), skin infections, necrotizing fasciitis (flesh-eating disease), septicemia, erysipelas, cellulitis, acute rheumatic fever, and toxic shock. The conversion from nonpathogenic to toxigenic strains of S. pyogenes is frequently mediated by bacteriophage infection. One of the key bacteriophage-encoded virulence factors is a putative "hyaluronidase," HylP1, a phage tail-fiber protein responsible for the digestion of the S. pyogenes hyaluronan capsule during phage infection. Here we demonstrate that HylP1 is a hyaluronate lyase. The 3D structure, at 1.8-angstroms resolution, reveals an unusual triple-stranded beta-helical structure and provides insight into the structural basis for phage tail assembly and the role of phage tail proteins in virulence. Unlike the triple-stranded beta-helix assemblies of the bacteriophage T4 injection machinery and the tailspike endosialidase of the Escherichia coli K1 bacteriophage K1F, HylP1 possesses three copies of the active center on the triple-helical fiber itself without the need for an accessory catalytic domain. The triple-stranded beta-helix is not simply a structural scaffold, as previously envisaged; it is harnessed to provide a 200-angstroms-long substrate-binding groove for the optimal reduction in hyaluronan viscosity to aid phage penetration of the capsule.
Insights
Streptococcus pyogenes hyaluronidase HylP1 is a hyaluronate lyase. Its unique triple-stranded beta-helix structure aids phage penetration by degrading the bacterial capsule.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Streptococcus pyogenes (group A Streptococcus) causes severe invasive infections.
- Bacteriophage infection often converts nonpathogenic S. pyogenes to toxigenic strains.
- Phage-encoded hyaluronidase HylP1 is a key virulence factor, degrading the S. pyogenes hyaluronan capsule.
Purpose of the Study:
- To characterize the enzyme HylP1 as a hyaluronate lyase.
- To determine the 3D structure of HylP1 and elucidate its mechanism of action.
- To understand the role of HylP1 in bacteriophage virulence and capsule penetration.
Main Methods:
- 3D structure determination of HylP1 at 1.8-angstroms resolution.
- Biochemical assays to confirm hyaluronate lyase activity.
- Structural comparison with other bacteriophage enzymes.
Main Results:
- HylP1 was confirmed to be a hyaluronate lyase.
- The 3D structure revealed an unusual triple-stranded beta-helical fold.
- HylP1 possesses intrinsic catalytic activity without accessory domains, featuring a long substrate-binding groove.
Conclusions:
- The triple-stranded beta-helix of HylP1 is not merely structural but functional, facilitating hyaluronan degradation.
- HylP1's unique structure enhances phage penetration of the S. pyogenes capsule, contributing to virulence.
- This study provides structural insights into phage tail assembly and the role of phage proteins in bacterial infection.
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