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Updated: Aug 14, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Frequent epigenetic silencing of the bone morphogenetic protein 2 gene through methylation in gastric carcinomas
X-Z Wen1, Y Akiyama, S B Baylin
1Department of Molecular Oncology, Graduate School of Medicine and Dentistry, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo, Japan.
Abstract:
Recently, it was reported that exogenous bone morphogenetic protein (BMP)-2 acted as an antiproliferative agent in a variety of cell lines, including normal and cancerous gastric cell lines, indicating that BMP-2 plays an important role during cell growth. However, despite the loss of BMP-2 expression in several cancers, the underlying mechanism remains unknown. Epigenetic silencing through DNA methylation is one of the key steps during carcinogenesis. In this study, we found, through analysis by the methylation-specific polymerase chain reaction technique, CpG island methylation of the BMP-2 promoter region in gastric and colon cancer cell lines. BMP-2 mRNA was found to be activated after 5-aza-2'-deoxycytidine treatment of the methylation-positive cells. Moreover, 24 of the 56 (42.9%) gastric cancer tissues exhibited promoter methylation. Immunohistochemical staining revealed that 18 of the 24 (75%) gastric cancer tissues without methylation signals exhibited BMP-2 expression, whereas among 20 cancer tissues with strong methylation signals only four (20%) expressed BMP-2 (P = 0.0003). These findings indicate that BMP-2 methylation is strongly associated with the loss of BMP-2 protein expression in the primary gastric carcinomas. BMP-2 methylation was more often observed in diffuse type (60.7%) than in intestinal type (25%) gastric carcinomas (P = 0.007). Thus, aberrant BMP-2 methylation and the resultant loss of BMP-2 expression may be related to gastric carcinogenesis, particularly in the diffuse type.
Insights
Bone morphogenetic protein-2 (BMP-2) promoter methylation silences BMP-2 expression in gastric cancer. This epigenetic silencing is linked to carcinogenesis, especially in diffuse-type gastric tumors.
Area of Science:
- Molecular Biology
- Oncology
- Epigenetics
Background:
- Bone morphogenetic protein-2 (BMP-2) exhibits antiproliferative effects on gastric cells.
- Loss of BMP-2 expression is observed in various cancers, but the mechanism is unclear.
- Epigenetic silencing via DNA methylation is a critical factor in cancer development.
Purpose of the Study:
- To investigate the role of BMP-2 promoter methylation in gastric and colon cancer.
- To determine the association between BMP-2 methylation and BMP-2 expression in gastric cancer tissues.
- To explore the potential link between BMP-2 methylation and gastric carcinogenesis, particularly the diffuse type.
Main Methods:
- Methylation-specific polymerase chain reaction (PCR) was used to analyze BMP-2 promoter methylation in cell lines and tissues.
- 5-aza-2'-deoxycytidine treatment was employed to assess BMP-2 mRNA activation in methylated cells.
- Immunohistochemical staining was performed to evaluate BMP-2 protein expression in gastric cancer tissues.
Main Results:
- CpG island methylation of the BMP-2 promoter was detected in gastric and colon cancer cell lines.
- BMP-2 mRNA expression was restored upon demethylation treatment.
- BMP-2 promoter methylation was found in 42.9% of gastric cancer tissues, correlating with reduced BMP-2 protein expression (P = 0.0003).
- BMP-2 methylation was significantly more prevalent in diffuse-type (60.7%) compared to intestinal-type (25%) gastric carcinomas (P = 0.007).
Conclusions:
- Aberrant methylation of the BMP-2 promoter leads to the loss of BMP-2 expression in gastric cancer.
- BMP-2 promoter methylation is strongly associated with reduced BMP-2 protein levels in primary gastric carcinomas.
- Epigenetic silencing of BMP-2 may contribute to gastric carcinogenesis, with a notable link to the diffuse histological subtype.
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