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Published on: December 22, 2023
Regulation of DNA repair gene expression in human cancer cell lines
Claire J McGurk1, Michele Cummings, Beate Köberle
1Prostate Cancer Research Centre, Institute of Urology, UCL, 3rd Floor Research Laboratories, London, W1W 7EJ, United Kingdom.
Abstract:
Although most advanced cancers are incurable, the majority of testicular germ cell tumors can be cured using cisplatin-based combination chemotherapy. The nucleotide excision repair (NER) pathway removes most DNA adducts produced by cisplatin, and the low levels of NER in testis tumor cells may explain why these cancers are curable. Three NER proteins: ERCC1, XPF, and XPA, are present at low levels in testis tumor cell lines, and addition of these proteins to protein extracts of testis tumor cells increases their in vitro DNA repair capacity to normal levels. The aim of this study was to identify the mechanism responsible for the low levels of these DNA repair proteins. The levels of the mRNA transcripts for ERCC1, XPF, and XPA were measured in a panel of 14 different human cancer cell lines, using real-time PCR. Three ERCC1 splice variants were identified and quantitated. Three alternative transcription start points (TSPs) were identified for ERCC1 but none were testis-specific. The significantly lower levels of ERCC1, XPF, and XPA protein in testis tumor cell lines cannot be explained solely by differences in transcriptional efficiency or mRNA stability. For ERCC1, post-transcriptional control by alternative splicing does not account for the testis-specific low levels of protein expression. Pulse-chase experiments showed that the half-life of ERCC1 protein in a testis tumor cell line was not significantly different to that in a prostate cancer cell line. Taken together, these results suggest that constitutive levels of these DNA repair proteins are controlled at the level of translation.
Insights
Testicular germ cell tumors are curable due to low nucleotide excision repair (NER) protein levels. This study found that low expression of ERCC1, XPF, and XPA DNA repair proteins in these tumors is controlled at the translational level.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- Most advanced cancers are incurable, but testicular germ cell tumors (TGCTs) are highly curable with cisplatin chemotherapy.
- The nucleotide excision repair (NER) pathway removes DNA adducts formed by cisplatin, and its low activity in TGCTs correlates with curability.
- Key NER proteins ERCC1, XPF, and XPA are expressed at low levels in TGCT cell lines.
Purpose of the Study:
- To investigate the mechanism underlying the reduced expression of ERCC1, XPF, and XPA proteins in TGCTs.
- To determine if transcriptional or post-transcriptional mechanisms explain the low DNA repair protein levels in testis tumor cells.
Main Methods:
- Real-time PCR was used to quantify mRNA levels of ERCC1, XPF, and XPA in 14 human cancer cell lines.
- Analysis included identification and quantification of ERCC1 splice variants and transcription start points (TSPs).
- Pulse-chase experiments assessed the protein half-life of ERCC1 in TGCT and prostate cancer cell lines.
Main Results:
- Significantly lower protein levels of ERCC1, XPF, and XPA were observed in TGCT cell lines compared to others.
- Transcriptional efficiency and mRNA stability did not fully explain the reduced protein levels.
- Alternative splicing of ERCC1 did not account for the testis-specific low protein expression.
- ERCC1 protein half-life was similar in TGCT and prostate cancer cell lines, ruling out post-translational degradation differences.
Conclusions:
- The low constitutive levels of ERCC1, XPF, and XPA proteins in TGCTs are not explained by transcriptional regulation or mRNA stability.
- Post-transcriptional regulation via alternative splicing or protein degradation does not account for the observed low expression.
- Evidence suggests that the control of these crucial DNA repair proteins in TGCTs occurs at the translational level.
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