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Updated: Aug 14, 2026

Comparative Lesions Analysis Through a Targeted Sequencing Approach
Published on: November 5, 2019
Investigating human cancer etiology by DNA lesion footprinting and mutagenicity analysis
Ahmad Besaratinia1, Gerd P Pfeifer
1Division of Biology, Beckman Research Institute, City of Hope National Medical Center, Duarte, CA 91010, USA. ania@coh.org
Abstract:
Many genotoxic carcinogens are known to leave unique signatures on cancer-related genes. The signature of carcinogens is manifested by the induction of characteristic mutations at distinctive nucleotide positions along oncogenes and/or tumor suppressor genes. Often, the nucleotide positions, wherein mutations occur, co-localize with the sites of initial DNA damage induced by the respective carcinogens. Thus, DNA damage-targeted mutation can be a predictor of carcinogenicity of genotoxins. Today, genomic sequencing technologies for investigating human cancer etiology are based on DNA-lesion footprinting in conjunction with mutagenicity analysis of genotoxic carcinogens. In this review article, we discuss the ligation-mediated PCR and terminal transferase-dependent-PCR, two versatile DNA-lesion footprinting techniques. We highlight the in vitro shuttle vector-based mutation systems for investigating site-specific mutagenicity of carcinogens and the in vivo transgenic rodent mutation systems for exploring DNA damaging and mutagenic properties of carcinogens. We present examples of application of each of these methodologies to human cancer etiology, and provide prospective views on investigations using these technologies for carcinogenicity testing.
Insights
Genotoxic carcinogens leave unique DNA mutation signatures on cancer genes. DNA damage-targeted mutations can predict carcinogen potential, aiding cancer etiology research.
Area of Science:
- Molecular Biology
- Genetics
- Toxicology
Background:
- Genotoxic carcinogens induce characteristic mutations in cancer-related genes.
- These mutations often occur at sites of initial DNA damage, creating a unique carcinogen signature.
- DNA damage-targeted mutations can serve as predictors of genotoxin carcinogenicity.
Purpose of the Study:
- To review DNA-lesion footprinting techniques for studying carcinogen-induced mutations.
- To highlight methods for investigating carcinogen mutagenicity in vitro and in vivo.
- To discuss applications in human cancer etiology and carcinogenicity testing.
Main Methods:
- Ligation-mediated PCR (polymerase chain reaction)
- Terminal transferase-dependent PCR
- In vitro shuttle vector-based mutation systems
- In vivo transgenic rodent mutation systems
Main Results:
- DNA-lesion footprinting techniques, like ligation-mediated PCR and terminal transferase-dependent PCR, are versatile tools.
- In vitro and in vivo systems allow for site-specific mutagenicity and DNA damaging property investigations.
- These methodologies have been applied to human cancer etiology studies.
Conclusions:
- DNA damage-targeted mutations are valuable predictors of carcinogenicity.
- Genomic sequencing technologies combined with DNA-lesion footprinting are crucial for cancer etiology research.
- These techniques offer prospective views for carcinogenicity testing and understanding human cancer development.
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